Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC7.82□□□□□ -1.16
COL9A1P20849 HSFY6P-201ENST00000445573 403 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 IGKV1OR-3-201ENST00000446944 348 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 AC004980.3-201ENST00000447046 365 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC7.82□□□□□ -1.16
COL9A1P20849 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC7.82□□□□□ -1.16
COL9A1P20849 AC079168.1-201ENST00000458741 345 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 RN7SL518P-201ENST00000491887 280 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 HSPD1P15-201ENST00000505573 1122 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 AC079140.5-201ENST00000507882 310 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 AC004062.1-201ENST00000509926 645 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC7.82□□□□□ -1.16
COL9A1P20849 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC7.82□□□□□ -1.16
COL9A1P20849 IGHVIII-13-1-201ENST00000517613 291 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 LRRC31-204ENST00000523069 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL9A1P20849 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC7.82□□□□□ -1.16
COL9A1P20849 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.82□□□□□ -1.16
COL9A1P20849 AC124068.1-201ENST00000563131 678 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC7.82□□□□□ -1.16
COL9A1P20849 AP001029.3-201ENST00000588063 596 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC7.82□□□□□ -1.16
COL9A1P20849 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC7.82□□□□□ -1.16
COL9A1P20849 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC7.82□□□□□ -1.16
COL9A1P20849 AL096712.1-201ENST00000614561 159 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 ATM-230ENST00000640388 578 ntTSL 5 BASIC7.82□□□□□ -1.16
COL9A1P20849 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
COL9A1P20849 LINC00689-203ENST00000438049 3946 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL9A1P20849 LAX1-203ENST00000442561 3023 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL9A1P20849 MMP20-201ENST00000260228 1956 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL9A1P20849 AC008124.1-201ENST00000609803 9730 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 TDRD9-201ENST00000339063 3447 ntTSL 5 BASIC7.82□□□□□ -1.16
COL9A1P20849 LINC02210-213ENST00000591271 9678 ntTSL 3 BASIC7.82□□□□□ -1.16
COL9A1P20849 CACYBP-209ENST00000613570 2835 ntTSL 2 BASIC7.82□□□□□ -1.16
COL9A1P20849 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL9A1P20849 AC004972.1-201ENST00000623934 2209 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 CDC27P3-201ENST00000635418 1910 ntBASIC7.82□□□□□ -1.16
COL9A1P20849 NEDD4L-214ENST00000586263 3347 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 SND1-IT1-201ENST00000623342 2481 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 LRRC37BP1-203ENST00000417404 4742 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 IKZF5-201ENST00000368886 4555 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 CPSF7-206ENST00000448745 1749 ntAPPRIS ALT1 TSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 INO80C-212ENST00000592173 3245 ntTSL 2 BASIC7.81□□□□□ -1.16
COL9A1P20849 BMPR1APS1-201ENST00000403332 1598 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 SLIT3-202ENST00000404867 8903 ntTSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 WDR89-204ENST00000620954 2935 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
COL9A1P20849 COL12A1-211ENST00000615798 11579 ntTSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 RIT2-201ENST00000326695 1092 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 OR10J3-201ENST00000332217 990 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
COL9A1P20849 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 RNU12-2P-201ENST00000364789 156 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 Y_RNA.463-201ENST00000384271 102 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 AC078974.1-201ENST00000411597 223 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 AC137499.1-201ENST00000427602 88 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 AC092106.2-201ENST00000436597 487 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 PRPS1P1-201ENST00000445305 876 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 SRP68P2-201ENST00000456184 254 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 AC034222.1-201ENST00000494052 532 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 RPS27P27-201ENST00000498779 255 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 AL445187.1-201ENST00000502685 260 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 GZMAP1-201ENST00000503054 631 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 AC010350.1-201ENST00000504908 231 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 Y_RNA.661-201ENST00000516003 99 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 SNORD27.1-201ENST00000516319 72 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 RNA5SP454-201ENST00000517231 127 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 GNAI2P1-201ENST00000541815 315 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC7.81□□□□□ -1.16
COL9A1P20849 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC7.81□□□□□ -1.16
COL9A1P20849 AC026826.3-201ENST00000561747 158 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 MT1CP-201ENST00000567054 174 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC7.81□□□□□ -1.16
COL9A1P20849 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC7.81□□□□□ -1.16
COL9A1P20849 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 AC011626.1-201ENST00000604710 562 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC7.81□□□□□ -1.16
COL9A1P20849 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC7.81□□□□□ -1.16
COL9A1P20849 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC7.81□□□□□ -1.16
COL9A1P20849 AC129908.1-201ENST00000624553 648 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 MIR665-201ENST00000635949 72 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC7.81□□□□□ -1.16
COL9A1P20849 SVEP1-203ENST00000401783 12350 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC7.81□□□□□ -1.16
COL9A1P20849 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 BTN2A1-203ENST00000429381 3113 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 ZNF734P-201ENST00000419494 1534 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL9A1P20849 HSP90AB2P-201ENST00000507090 2176 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC7.81□□□□□ -1.16
COL9A1P20849 AC079949.2-201ENST00000617117 2933 ntBASIC7.81□□□□□ -1.16
COL9A1P20849 EPHA7-201ENST00000369297 1885 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms