Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HOXD4P09016 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HOXD4P09016 AL359715.3-201ENST00000569267 2123 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 AC012618.3-205ENST00000637896 1496 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 RNA5SP241-201ENST00000391326 114 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 OR4K12P-201ENST00000406538 961 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 MIR1182-201ENST00000408363 97 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXD4P09016 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXD4P09016 AC234781.4-201ENST00000419384 244 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AC106901.1-201ENST00000425086 698 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 RPS29P10-201ENST00000439197 166 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AC114878.1-201ENST00000441166 358 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXD4P09016 CEACAMP9-201ENST00000442990 513 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXD4P09016 GYG1P1-201ENST00000460864 698 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 RPS3AP41-201ENST00000462701 778 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 HMGN1P8-201ENST00000463578 288 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXD4P09016 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXD4P09016 OR51K1P-201ENST00000510214 950 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXD4P09016 RNA5SP360-201ENST00000516555 118 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXD4P09016 RN7SL290P-201ENST00000578661 300 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXD4P09016 AC009237.13-201ENST00000603193 276 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AC087283.1-201ENST00000604029 1074 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 AC079298.1-201ENST00000625026 1619 ntBASIC4.7□□□□□ -1.66
HOXD4P09016 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXD4P09016 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXD4P09016 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
HOXD4P09016 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 U3.3-201ENST00000362986 216 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 RNU6-1331P-201ENST00000363658 106 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 RNU1-146P-201ENST00000364015 165 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AC007618.1-201ENST00000366455 732 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
HOXD4P09016 Z97832.1-201ENST00000402490 328 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 FAR2P2-201ENST00000413041 594 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.69□□□□□ -1.66
HOXD4P09016 AL807761.1-201ENST00000417622 171 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 FAR2P4-202ENST00000425399 584 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AC104837.2-201ENST00000427236 424 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
HOXD4P09016 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC239798.3-201ENST00000454459 408 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.69□□□□□ -1.66
HOXD4P09016 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC058823.1-201ENST00000485315 474 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC004980.4-201ENST00000513375 203 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AC138938.1-201ENST00000515431 782 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 SCARNA20.4-201ENST00000516969 131 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 NPM1P52-201ENST00000518264 846 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC026688.1-201ENST00000520639 1168 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms