Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC092332.1-201ENST00000563684 829 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 GLYATL1P2-202ENST00000588046 902 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AP003973.1-201ENST00000604639 691 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC010738.1-201ENST00000604970 987 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC008555.7-201ENST00000605008 583 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AL592221.1-201ENST00000605266 382 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AF246928.1-201ENST00000623768 87 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AP003072.4-201ENST00000624580 310 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC116667.2-201ENST00000641075 823 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC025263.3-201ENST00000622965 1396 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 PROS2P-201ENST00000474651 1951 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 OR56B2P-201ENST00000317102 954 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 SNORD65.1-201ENST00000390889 71 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 GSTA8P-201ENST00000404253 637 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AL021407.1-201ENST00000404531 386 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AL355379.1-201ENST00000405542 640 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 RNA5SP156-201ENST00000410250 110 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 RNA5SP80-201ENST00000410475 111 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 SEPT7P5-201ENST00000434048 306 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 PNKDP1-201ENST00000435914 430 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 ELOCP8-201ENST00000439309 332 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 UBE2V1P5-201ENST00000440070 405 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 ELOCP15-201ENST00000442090 332 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AL591503.2-201ENST00000442314 1005 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 RFC5P1-201ENST00000454419 874 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC103563.5-201ENST00000455643 364 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 RN7SL221P-201ENST00000466190 281 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 RPL30P6-201ENST00000475925 342 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 CR383656.1-201ENST00000484916 377 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC021146.8-201ENST00000507455 733 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 MTCYBP16-201ENST00000509187 1129 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 MTND5P13-201ENST00000513046 1079 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 RN7SKP67-201ENST00000515905 235 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC005951.1-201ENST00000576706 485 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 OR4K7P-201ENST00000580232 945 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 MIR4433B-201ENST00000581329 102 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 EIF4A2P1-201ENST00000587313 1063 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AP001437.1-201ENST00000608783 456 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC090425.2-201ENST00000608818 501 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC097505.1-201ENST00000610199 565 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC004223.4-201ENST00000612426 332 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 RFPL4AP6-201ENST00000616792 846 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC098679.5-201ENST00000624394 571 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC016717.3-201ENST00000624730 554 ntBASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 AC005225.5-201ENST00000623547 2225 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms