Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL161722.2-201ENST00000434731 981 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC046176.1-201ENST00000435260 1170 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 SEPT7P3-201ENST00000455017 621 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 RN7SL189P-201ENST00000468631 289 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 RN7SL860P-201ENST00000473738 223 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 RPL7P16-201ENST00000479738 738 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 RN7SL591P-201ENST00000496150 292 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 MIR4691-201ENST00000583764 85 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC002069.2-201ENST00000603580 883 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC005972.3-201ENST00000606304 481 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 RNA5SP439-201ENST00000617595 124 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC087385.3-201ENST00000620477 187 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 LINC00216-201ENST00000623548 1126 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC112694.2-201ENST00000623697 768 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 HSPA8P14-201ENST00000552265 1805 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 RNA5SP223-201ENST00000365174 120 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC234781.4-201ENST00000419384 244 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 RPS27AP6-201ENST00000427962 448 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AL606490.7-201ENST00000433136 191 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AL353718.1-201ENST00000451028 517 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 ADAD1P2-201ENST00000588476 646 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC087283.1-201ENST00000604029 1074 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC067838.1-201ENST00000606064 577 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AL133370.2-201ENST00000619934 439 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC006453.5-201ENST00000636451 619 ntBASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC3Q9BQI4 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 RN7SKP95-201ENST00000362860 303 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 RN7SKP149-201ENST00000363008 344 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 CYB5AP4-201ENST00000396692 399 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 UBE2V1P15-201ENST00000407776 448 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 RPL26P29-201ENST00000415623 438 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 CHEK2P3-201ENST00000416118 248 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 OR2AM1P-201ENST00000422137 422 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 RNF19BPX-201ENST00000426224 625 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC012497.1-201ENST00000429392 575 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 RPL5P2-201ENST00000429598 854 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 146 ms