Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.76□□□□□ -1.49
BRCA1P38398 AC025884.1-201ENST00000556034 378 ntBASIC5.76□□□□□ -1.49
BRCA1P38398 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.76□□□□□ -1.49
BRCA1P38398 AC004777.1-201ENST00000624317 287 ntBASIC5.76□□□□□ -1.49
BRCA1P38398 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.76□□□□□ -1.49
BRCA1P38398 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.76□□□□□ -1.49
BRCA1P38398 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
BRCA1P38398 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.76□□□□□ -1.49
BRCA1P38398 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
BRCA1P38398 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.76□□□□□ -1.49
BRCA1P38398 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 QRSL1P2-201ENST00000418582 964 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 COX6CP13-201ENST00000428703 226 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 NFYAP1-201ENST00000431953 972 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC5.75□□□□□ -1.49
BRCA1P38398 AC009963.4-201ENST00000448535 339 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.75□□□□□ -1.49
BRCA1P38398 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.75□□□□□ -1.49
BRCA1P38398 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 AC010547.7-201ENST00000570323 333 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 AC022884.2-201ENST00000578535 580 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 AL133243.1-201ENST00000614487 366 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 AC090506.2-201ENST00000624521 419 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
BRCA1P38398 AC138907.8-201ENST00000623981 2256 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.75□□□□□ -1.49
BRCA1P38398 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.75□□□□□ -1.49
BRCA1P38398 CCAT2-201ENST00000630920 1752 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
BRCA1P38398 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 SNORA48.4-201ENST00000391089 134 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 OR13Z1P-201ENST00000416141 834 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 RCC2P2-201ENST00000422174 918 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.75□□□□□ -1.49
BRCA1P38398 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.75□□□□□ -1.49
BRCA1P38398 SNORA67.7-201ENST00000516664 135 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.75□□□□□ -1.49
BRCA1P38398 AC093249.4-201ENST00000564755 259 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.75□□□□□ -1.49
BRCA1P38398 AL121932.1-201ENST00000605542 214 ntBASIC5.75□□□□□ -1.49
BRCA1P38398 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.75□□□□□ -1.49
BRCA1P38398 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BRCA1P38398 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.75□□□□□ -1.49
BRCA1P38398 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 VN2R3P-201ENST00000422626 1412 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
BRCA1P38398 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
BRCA1P38398 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
BRCA1P38398 NOL8P1-201ENST00000508336 3529 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.74□□□□□ -1.49
BRCA1P38398 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 RPL21P65-201ENST00000406094 466 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.74□□□□□ -1.49
BRCA1P38398 TMBIM7P-201ENST00000418074 855 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 BX276092.6-201ENST00000430476 250 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.74□□□□□ -1.49
BRCA1P38398 RPL21P89-201ENST00000444021 467 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 BX276092.8-201ENST00000455722 250 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 RN7SL303P-201ENST00000469773 251 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 CCNG2P1-201ENST00000549521 1000 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.74□□□□□ -1.49
BRCA1P38398 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.74□□□□□ -1.49
BRCA1P38398 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.74□□□□□ -1.49
BRCA1P38398 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.74□□□□□ -1.49
BRCA1P38398 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.74□□□□□ -1.49
BRCA1P38398 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
BRCA1P38398 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BRCA1P38398 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
BRCA1P38398 AC010401.2-201ENST00000575137 4934 ntBASIC5.74□□□□□ -1.49
BRCA1P38398 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
BRCA1P38398 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
BRCA1P38398 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
BRCA1P38398 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms