Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SKP36-201ENST00000363997 312 ntBASIC6.77□□□□□ -1.33
MSX1P28360 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
MSX1P28360 MIR138-2-201ENST00000384916 84 ntBASIC6.77□□□□□ -1.33
MSX1P28360 FGFR1OP2P1-201ENST00000395943 500 ntBASIC6.77□□□□□ -1.33
MSX1P28360 MIR320C1-201ENST00000408566 88 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AC073264.1-201ENST00000411508 416 ntBASIC6.77□□□□□ -1.33
MSX1P28360 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.77□□□□□ -1.33
MSX1P28360 AL136133.1-201ENST00000413694 376 ntBASIC6.77□□□□□ -1.33
MSX1P28360 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AL358176.2-201ENST00000425769 204 ntBASIC6.77□□□□□ -1.33
MSX1P28360 Z82205.1-201ENST00000428456 297 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC6.77□□□□□ -1.33
MSX1P28360 AL606489.2-201ENST00000433886 234 ntBASIC6.77□□□□□ -1.33
MSX1P28360 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 RPS7P4-201ENST00000444127 582 ntBASIC6.77□□□□□ -1.33
MSX1P28360 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 OR7E62P-201ENST00000456741 477 ntBASIC6.77□□□□□ -1.33
MSX1P28360 MTND5P22-201ENST00000458380 195 ntBASIC6.77□□□□□ -1.33
MSX1P28360 VN1R6P-201ENST00000458417 907 ntBASIC6.77□□□□□ -1.33
MSX1P28360 RPS27AP17-201ENST00000463344 455 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AC097493.1-201ENST00000463958 372 ntBASIC6.77□□□□□ -1.33
MSX1P28360 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC6.77□□□□□ -1.33
MSX1P28360 PGAM4P2-201ENST00000512491 721 ntBASIC6.77□□□□□ -1.33
MSX1P28360 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 IGLVVI-25-1-201ENST00000521893 249 ntBASIC6.77□□□□□ -1.33
MSX1P28360 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC6.77□□□□□ -1.33
MSX1P28360 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AC087257.2-201ENST00000538759 928 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 AC078860.1-201ENST00000546601 527 ntTSL 2 BASIC6.77□□□□□ -1.33
MSX1P28360 AC068714.1-201ENST00000559623 800 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC6.77□□□□□ -1.33
MSX1P28360 AC027796.1-201ENST00000575593 512 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC6.77□□□□□ -1.33
MSX1P28360 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC6.77□□□□□ -1.33
MSX1P28360 AL390058.1-201ENST00000603834 629 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AL355598.1-201ENST00000604169 202 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AC133041.1-201ENST00000608389 201 ntTSL 3 BASIC6.77□□□□□ -1.33
MSX1P28360 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC6.77□□□□□ -1.33
MSX1P28360 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 AL356585.4-201ENST00000623078 1229 ntBASIC6.77□□□□□ -1.33
MSX1P28360 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC6.77□□□□□ -1.33
MSX1P28360 ATM-228ENST00000639240 498 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 PLP1-220ENST00000612423 3132 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
MSX1P28360 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 AC018992.1-201ENST00000523778 2149 ntBASIC6.77□□□□□ -1.33
MSX1P28360 ZNF544-216ENST00000600044 2784 ntAPPRIS ALT2 TSL 4 BASIC6.77□□□□□ -1.33
MSX1P28360 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 FLJ42393-201ENST00000623801 2270 ntBASIC6.76□□□□□ -1.33
MSX1P28360 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 AC068870.3-201ENST00000625077 2536 ntBASIC6.76□□□□□ -1.33
MSX1P28360 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 AC011155.1-201ENST00000316512 456 ntBASIC6.76□□□□□ -1.33
MSX1P28360 RNA5SP238-201ENST00000365464 120 ntBASIC6.76□□□□□ -1.33
MSX1P28360 RNU6-639P-201ENST00000384074 107 ntBASIC6.76□□□□□ -1.33
MSX1P28360 RNU6-532P-201ENST00000384318 107 ntBASIC6.76□□□□□ -1.33
MSX1P28360 RNU6-769P-201ENST00000384407 104 ntBASIC6.76□□□□□ -1.33
MSX1P28360 AL356057.3-201ENST00000402607 340 ntBASIC6.76□□□□□ -1.33
MSX1P28360 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 AL139100.1-201ENST00000408001 498 ntBASIC6.76□□□□□ -1.33
MSX1P28360 SNORA3.1-201ENST00000408166 111 ntBASIC6.76□□□□□ -1.33
MSX1P28360 GRIK1-AS1-202ENST00000412579 818 ntTSL 5 BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms