Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 U3.23-201ENST00000391132 200 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 OR51B3P-201ENST00000412287 913 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 AL360081.1-201ENST00000428299 555 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 NMNAT1P2-201ENST00000435192 860 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 AC005154.2-201ENST00000438110 379 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 MRPL48P1-201ENST00000445390 636 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CISHQ9NSE2 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 AC091042.1-201ENST00000579213 173 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 AL132656.3-201ENST00000606384 1595 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CISHQ9NSE2 DHX9P1-201ENST00000436565 3076 ntBASIC5.06□□□□□ -1.6
CISHQ9NSE2 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CISHQ9NSE2 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CISHQ9NSE2 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CISHQ9NSE2 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.06□□□□□ -1.6
CISHQ9NSE2 AC003985.2-201ENST00000562268 1669 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 AL133270.1-201ENST00000402635 279 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 AL591848.1-201ENST00000413092 322 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 BX510359.2-201ENST00000417920 305 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 RPL6P21-201ENST00000418672 846 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 FABP7P1-201ENST00000424004 391 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 IGLV2-34-201ENST00000490007 283 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 AC231760.1-201ENST00000498002 260 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 MORF4L2P1-201ENST00000503761 858 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 MIR4480-201ENST00000582492 71 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 AC073137.1-201ENST00000605636 634 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 MIR6853-201ENST00000619642 74 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 AC138965.3-201ENST00000623875 498 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 AP001784.1-201ENST00000624107 428 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 STX3-208ENST00000641815 3236 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 ZFRP1-201ENST00000457579 2970 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.05□□□□□ -1.6
CISHQ9NSE2 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CISHQ9NSE2 AC083843.2-201ENST00000568248 6253 ntBASIC5.05□□□□□ -1.6
CISHQ9NSE2 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CISHQ9NSE2 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CISHQ9NSE2 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CISHQ9NSE2 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 AL592291.1-201ENST00000403830 352 ntBASIC5.04□□□□□ -1.6
CISHQ9NSE2 AP000580.1-201ENST00000404439 358 ntBASIC5.04□□□□□ -1.6
CISHQ9NSE2 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 RPS26P4-201ENST00000431743 355 ntBASIC5.04□□□□□ -1.6
CISHQ9NSE2 AC097523.2-201ENST00000435551 652 ntBASIC5.04□□□□□ -1.6
CISHQ9NSE2 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 RNU2-30P-201ENST00000516209 141 ntBASIC5.04□□□□□ -1.6
CISHQ9NSE2 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 Mico1.1-201ENST00000611698 204 ntBASIC5.04□□□□□ -1.6
CISHQ9NSE2 AC011815.3-201ENST00000624194 473 ntBASIC5.04□□□□□ -1.6
CISHQ9NSE2 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
CISHQ9NSE2 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CISHQ9NSE2 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CISHQ9NSE2 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CISHQ9NSE2 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.03□□□□□ -1.6
CISHQ9NSE2 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
CISHQ9NSE2 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms