Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC092451.3-201ENST00000625067 1343 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 TBCAP2-201ENST00000416175 326 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 E2F6P2-201ENST00000420708 748 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 RPS29P7-201ENST00000439662 171 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.3□□□□□ -1.88
PRKDCP78527 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.3□□□□□ -1.88
PRKDCP78527 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC3.3□□□□□ -1.88
PRKDCP78527 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 HSPE1P5-201ENST00000561489 272 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 AC069061.3-201ENST00000582254 823 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.3□□□□□ -1.88
PRKDCP78527 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 ERG-202ENST00000398897 4651 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 EIF2AP4-201ENST00000424793 1781 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC3.3□□□□□ -1.88
PRKDCP78527 MTND6P5-201ENST00000448266 512 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 AC115115.1-201ENST00000449927 248 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 EIF2S2P5-201ENST00000457635 968 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC3.3□□□□□ -1.88
PRKDCP78527 AL162574.1-201ENST00000615702 950 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 AC108359.1-201ENST00000616451 1211 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 AC015967.1-201ENST00000619893 476 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 ZNF285B-201ENST00000561698 1767 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC3.3□□□□□ -1.88
PRKDCP78527 AP001157.1-201ENST00000550837 2339 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC3.3□□□□□ -1.88
PRKDCP78527 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 Y_RNA.500-201ENST00000384466 111 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 EIF4A1P3-201ENST00000411521 244 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC010653.1-201ENST00000571108 881 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 uc_338.7-201ENST00000621834 124 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC125257.1-201ENST00000560400 2930 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AC093671.1-201ENST00000624981 2929 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 RGS17P1-201ENST00000423358 553 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC3.29□□□□□ -1.88
PRKDCP78527 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC011816.2-201ENST00000607089 556 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 AL359195.2-201ENST00000623657 4412 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 AC007382.1-201ENST00000624376 2618 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 RPL23AP38-201ENST00000423801 469 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 PAICSP4-201ENST00000517543 1253 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AC007991.1-201ENST00000522680 631 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC093829.1-201ENST00000506662 1618 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 POLR3A-201ENST00000372371 6640 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms