Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA3P55318 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXA3P55318 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXA3P55318 RPL7P50-201ENST00000600588 727 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 AC130352.1-201ENST00000602979 661 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 AC010245.2-201ENST00000606908 1167 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 MIR7154-201ENST00000620673 73 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 AC012414.7-202ENST00000622705 1090 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 AC243960.7-201ENST00000623532 707 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 AL445487.1-201ENST00000415694 1580 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 HSPD1P14-201ENST00000432666 1618 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC3.62□□□□□ -1.83
FOXA3P55318 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 SMG1P6-201ENST00000532337 2930 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA3P55318 TLK1P1-201ENST00000456760 2440 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
FOXA3P55318 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 RNU6-178P-201ENST00000384631 104 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 RNU1-77P-201ENST00000390868 162 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 RNU1-149P-201ENST00000390870 161 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 RNA5SP339-201ENST00000390987 122 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AL080315.1-201ENST00000406055 466 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 IGKV1OR9-1-201ENST00000424370 284 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA3P55318 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 AC093414.1-201ENST00000434712 514 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 SCAND3P1-201ENST00000439854 1060 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
FOXA3P55318 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA3P55318 AC007386.1-201ENST00000455212 582 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA3P55318 ATP5G1P3-201ENST00000463301 410 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 RPS26P28-201ENST00000470806 348 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 EIF1P7-201ENST00000487533 337 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 APOBEC3AP1-201ENST00000511396 287 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 LDHBP3-201ENST00000514909 822 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 RNA5SP228-201ENST00000516232 133 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 Vault.2-201ENST00000516519 98 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 MTCYBP19-201ENST00000517463 1124 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 AC011853.1-201ENST00000518911 454 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA3P55318 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 ARGFXP2-201ENST00000579304 949 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA3P55318 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AC015908.5-201ENST00000623289 343 ntBASIC3.61□□□□□ -1.83
FOXA3P55318 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA3P55318 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA3P55318 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA3P55318 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.6□□□□□ -1.83
FOXA3P55318 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA3P55318 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
FOXA3P55318 AL121834.1-202ENST00000404494 277 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC3.6□□□□□ -1.83
FOXA3P55318 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA3P55318 GAPDHP49-201ENST00000421421 961 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AL451139.1-201ENST00000434718 346 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AC002504.1-201ENST00000438281 691 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms