Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.69□□□□□ -1.5
MSX2P35548 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX2P35548 PTPN2P1-201ENST00000423212 1072 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AL354766.1-201ENST00000423396 542 ntBASIC5.69□□□□□ -1.5
MSX2P35548 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
MSX2P35548 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 AL354941.1-201ENST00000438600 464 ntBASIC5.69□□□□□ -1.5
MSX2P35548 MTCO1P19-201ENST00000443487 500 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AL353898.1-201ENST00000444055 238 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AL356133.1-201ENST00000444762 372 ntBASIC5.69□□□□□ -1.5
MSX2P35548 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 SDC4P-201ENST00000453285 601 ntBASIC5.69□□□□□ -1.5
MSX2P35548 FRG2FP-204ENST00000453982 852 ntBASIC5.69□□□□□ -1.5
MSX2P35548 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 AL354872.1-201ENST00000456361 967 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AC068724.1-201ENST00000487100 792 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AC069304.1-201ENST00000491593 704 ntBASIC5.69□□□□□ -1.5
MSX2P35548 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX2P35548 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX2P35548 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
MSX2P35548 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 Y_RNA.695-201ENST00000516715 107 ntBASIC5.69□□□□□ -1.5
MSX2P35548 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX2P35548 NDUFA5P2-201ENST00000519723 344 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX2P35548 MTCO3P15-201ENST00000526563 574 ntBASIC5.69□□□□□ -1.5
MSX2P35548 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX2P35548 AC008055.1-201ENST00000547032 609 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AC126615.2-201ENST00000553003 515 ntBASIC5.69□□□□□ -1.5
MSX2P35548 BLZF2P-201ENST00000553776 1130 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.69□□□□□ -1.5
MSX2P35548 AC090826.1-203ENST00000569235 490 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC5.69□□□□□ -1.5
MSX2P35548 AL121834.1-201ENST00000572284 509 ntBASIC5.69□□□□□ -1.5
MSX2P35548 ARGFXP2-201ENST00000579304 949 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AF131215.7-201ENST00000602443 707 ntBASIC5.69□□□□□ -1.5
MSX2P35548 OR2BH1P-201ENST00000608850 864 ntBASIC5.69□□□□□ -1.5
MSX2P35548 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.69□□□□□ -1.5
MSX2P35548 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 NCLP2-201ENST00000416078 1462 ntBASIC5.69□□□□□ -1.5
MSX2P35548 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.69□□□□□ -1.5
MSX2P35548 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.69□□□□□ -1.5
MSX2P35548 AL355488.2-201ENST00000609909 2850 ntBASIC5.69□□□□□ -1.5
MSX2P35548 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSX2P35548 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX2P35548 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
MSX2P35548 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSX2P35548 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSX2P35548 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSX2P35548 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX2P35548 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX2P35548 AC087752.1-201ENST00000391360 558 ntBASIC5.68□□□□□ -1.5
MSX2P35548 AL133264.1-201ENST00000407157 562 ntBASIC5.68□□□□□ -1.5
MSX2P35548 AL353133.1-201ENST00000407695 401 ntBASIC5.68□□□□□ -1.5
MSX2P35548 FCF1P9-201ENST00000412546 282 ntBASIC5.68□□□□□ -1.5
MSX2P35548 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.68□□□□□ -1.5
MSX2P35548 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX2P35548 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX2P35548 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX2P35548 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX2P35548 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX2P35548 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX2P35548 HMGB1P5-202ENST00000451497 985 ntBASIC5.68□□□□□ -1.5
MSX2P35548 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX2P35548 AC091544.1-201ENST00000484702 348 ntBASIC5.68□□□□□ -1.5
MSX2P35548 RPL7P41-201ENST00000485823 957 ntBASIC5.68□□□□□ -1.5
MSX2P35548 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX2P35548 GM2AP2-201ENST00000491764 562 ntBASIC5.68□□□□□ -1.5
MSX2P35548 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX2P35548 AC005178.1-201ENST00000508392 440 ntBASIC5.68□□□□□ -1.5
MSX2P35548 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX2P35548 OR4D12P-201ENST00000509361 911 ntBASIC5.68□□□□□ -1.5
MSX2P35548 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX2P35548 AC008549.1-201ENST00000512900 643 ntBASIC5.68□□□□□ -1.5
MSX2P35548 RNA5SP206-201ENST00000516703 121 ntBASIC5.68□□□□□ -1.5
MSX2P35548 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC5.68□□□□□ -1.5
MSX2P35548 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.68□□□□□ -1.5
MSX2P35548 HIGD1AP18-201ENST00000520730 278 ntBASIC5.68□□□□□ -1.5
MSX2P35548 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX2P35548 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC5.68□□□□□ -1.5
MSX2P35548 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX2P35548 OR5G4P-201ENST00000525251 760 ntBASIC5.68□□□□□ -1.5
MSX2P35548 BCAS2P1-201ENST00000528022 632 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 244 ms