Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 CYCSP42-201ENST00000450823 238 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXA9P31269 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 HMGB1P4-201ENST00000455362 567 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 RPS5P7-201ENST00000456664 608 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 RPL23AP56-201ENST00000460778 453 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 RN7SL354P-201ENST00000469282 294 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 OR11I1P-201ENST00000486033 954 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA9P31269 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA9P31269 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA9P31269 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA9P31269 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXA9P31269 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA9P31269 AC011453.2-201ENST00000603737 729 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 AC008833.1-201ENST00000611633 691 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA9P31269 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA9P31269 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
HOXA9P31269 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HOXA9P31269 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
HOXA9P31269 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 NAMPTP1-201ENST00000440465 2514 ntBASIC5.18□□□□□ -1.58
HOXA9P31269 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA9P31269 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 AL603750.1-201ENST00000624216 1717 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HOXA9P31269 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HOXA9P31269 AL358178.1-201ENST00000407698 397 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXA9P31269 COX6CP17-201ENST00000421389 185 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 SETP10-201ENST00000424368 814 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 C4BPAP2-201ENST00000428434 478 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA9P31269 AC046176.1-201ENST00000435260 1170 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 ARAFP2-201ENST00000440565 559 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA9P31269 TPT1P12-201ENST00000448968 492 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXA9P31269 AC093267.1-201ENST00000489176 961 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 SCARNA22-201ENST00000503991 125 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA9P31269 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA9P31269 AC034205.1-201ENST00000520621 638 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA9P31269 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXA9P31269 RN7SL290P-201ENST00000578661 300 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA9P31269 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA9P31269 AC019206.1-201ENST00000621938 425 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 AC021106.3-201ENST00000623925 531 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA9P31269 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
HOXA9P31269 NCLP2-201ENST00000416078 1462 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.17□□□□□ -1.58
HOXA9P31269 ZNF652P1-201ENST00000442420 1309 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA9P31269 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 ADAM5-202ENST00000399789 1942 ntBASIC5.17□□□□□ -1.58
HOXA9P31269 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA9P31269 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 DHX40P1-201ENST00000588725 1412 ntBASIC5.16□□□□□ -1.58
HOXA9P31269 AC073136.1-201ENST00000449426 2884 ntBASIC5.16□□□□□ -1.58
HOXA9P31269 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA9P31269 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA9P31269 OR4K15-201ENST00000305051 1216 ntBASIC5.16□□□□□ -1.58
HOXA9P31269 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms