Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC6.47□□□□□ -1.37
COL6A1P12109 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 RNA5SP319-201ENST00000362768 119 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 RNU6-636P-201ENST00000384598 107 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 GSTA12P-201ENST00000402398 508 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.47□□□□□ -1.37
COL6A1P12109 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC6.47□□□□□ -1.37
COL6A1P12109 AL133173.1-201ENST00000423458 397 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC6.47□□□□□ -1.37
COL6A1P12109 RPS3AP44-201ENST00000425466 790 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 RPL23AP4-201ENST00000427757 463 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC6.47□□□□□ -1.37
COL6A1P12109 AC022022.1-201ENST00000430304 178 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC6.47□□□□□ -1.37
COL6A1P12109 AC245517.2-201ENST00000442890 346 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AL450023.1-201ENST00000450868 751 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AURKAPS1-201ENST00000451805 1212 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC103563.5-201ENST00000455643 364 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AL133244.1-201ENST00000456007 258 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC6.47□□□□□ -1.37
COL6A1P12109 FTH1P2-201ENST00000466086 412 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 MTND2P14-201ENST00000482139 351 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 RN7SL97P-201ENST00000486780 299 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 AC010306.1-201ENST00000523223 1117 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AP000926.4-201ENST00000527351 454 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC6.47□□□□□ -1.37
COL6A1P12109 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 DUXAP6-201ENST00000553858 601 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 TXNP4-201ENST00000575018 310 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC063977.5-201ENST00000601044 974 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 MRPS35P3-201ENST00000603189 709 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC087763.1-201ENST00000603391 286 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AL353600.1-201ENST00000608148 251 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.47□□□□□ -1.37
COL6A1P12109 AL392048.1-201ENST00000613946 534 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC131159.1-201ENST00000621854 213 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 AP001784.1-201ENST00000624107 428 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC098679.5-201ENST00000624394 571 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC6.47□□□□□ -1.37
COL6A1P12109 AC022905.1-201ENST00000503430 3048 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 AC016583.1-201ENST00000624221 2431 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 AC093775.1-201ENST00000624154 1868 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 AC131971.1-201ENST00000332881 1482 ntBASIC6.47□□□□□ -1.37
COL6A1P12109 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.46□□□□□ -1.37
COL6A1P12109 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL6A1P12109 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
COL6A1P12109 AC062029.1-202ENST00000606164 3651 ntBASIC6.46□□□□□ -1.37
COL6A1P12109 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.46□□□□□ -1.37
COL6A1P12109 AC096656.1-201ENST00000623826 1364 ntBASIC6.46□□□□□ -1.37
COL6A1P12109 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL6A1P12109 LINC01963-201ENST00000562038 3148 ntBASIC6.46□□□□□ -1.37
COL6A1P12109 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
COL6A1P12109 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL6A1P12109 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL6A1P12109 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL6A1P12109 AL159987.1-201ENST00000347911 293 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 RNU6-1214P-201ENST00000363650 109 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 RNU4-24P-201ENST00000364565 139 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
COL6A1P12109 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
COL6A1P12109 TAF9BP2-201ENST00000400856 499 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AL109941.1-201ENST00000401925 229 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 GAPDHP42-201ENST00000406848 981 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 RNU4-64P-201ENST00000410795 131 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.46□□□□□ -1.38
COL6A1P12109 BTF3P9-201ENST00000418784 283 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 USP9YP26-201ENST00000421008 661 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AC104454.1-201ENST00000421341 1401 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC6.46□□□□□ -1.38
COL6A1P12109 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC6.46□□□□□ -1.38
COL6A1P12109 DPY19L2P2-203ENST00000435536 1858 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AC093716.1-201ENST00000435923 377 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6.46□□□□□ -1.38
COL6A1P12109 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC6.46□□□□□ -1.38
COL6A1P12109 SDC4P-201ENST00000453285 601 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 USP9YP25-201ENST00000457708 443 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 RPL31P3-201ENST00000458430 332 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AL157777.1-201ENST00000468100 304 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 AC090638.1-201ENST00000498296 909 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC6.46□□□□□ -1.38
COL6A1P12109 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC6.46□□□□□ -1.38
COL6A1P12109 AC034244.1-201ENST00000507687 207 ntBASIC6.46□□□□□ -1.38
COL6A1P12109 HPRT1P1-201ENST00000509498 657 ntBASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms