Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AP000547.3-204ENST00000588548 2523 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 RNU1-55P-201ENST00000365510 158 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 CGA-201ENST00000369582 729 ntTSL 5 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 SNRPEP2-201ENST00000397592 279 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 MTCO3P41-201ENST00000414801 328 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AL663061.1-201ENST00000416625 580 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC083875.1-201ENST00000419509 405 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 IPMKP1-201ENST00000425988 855 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 VN1R21P-201ENST00000426703 765 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 OFD1P12Y-201ENST00000427963 1207 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC124944.2-201ENST00000429866 1242 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC002504.1-201ENST00000438281 691 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 HBG2-204ENST00000444587 307 ntTSL 2 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AP000936.2-201ENST00000447151 681 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 BZW1P1-201ENST00000454901 1240 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 MTND6P6-201ENST00000478031 263 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC090013.1-201ENST00000485147 480 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC109486.1-201ENST00000486833 374 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 HMGN2P25-201ENST00000486956 268 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 NPM1P27-201ENST00000502784 830 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC006499.5-201ENST00000505037 514 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 SNX5P1-201ENST00000505757 1041 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 RN7SKP70-201ENST00000516655 271 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 ARL6IP1P3-201ENST00000524544 560 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 ANKRD36BP2-206ENST00000575193 1245 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 RN7SL270P-201ENST00000579643 281 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 CTSLP2-201ENST00000580501 394 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC008507.1-201ENST00000587506 734 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC022146.1-201ENST00000595307 847 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC139493.1-201ENST00000604368 397 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC024560.3-201ENST00000608482 349 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AL352984.2-201ENST00000611153 546 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 AC089999.3-201ENST00000622440 577 ntBASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
TRAIPQ9BWF2 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 CYP2G2P-201ENST00000594920 1485 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 RPL24P4-201ENST00000326586 421 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 PPIAP24-201ENST00000328558 471 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 AC023490.2-201ENST00000359859 470 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 RN7SKP171-201ENST00000364417 303 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 Y_RNA.553-201ENST00000384670 102 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 RNU6-648P-201ENST00000410190 107 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 RN7SKP142-201ENST00000411236 328 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 ALDH7A1P4-201ENST00000412255 178 ntBASIC7.32□□□□□ -1.24
TRAIPQ9BWF2 OFD1P11Y-201ENST00000418213 1177 ntBASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms