Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 DDX18P3-201ENST00000404856 2007 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 NEAT1-202ENST00000501122 22743 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 RNA5SP242-201ENST00000364171 118 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 SNORA67-201ENST00000384423 137 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 SNORA11.3-201ENST00000408471 128 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 RPL6P29-201ENST00000414863 865 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 EI24P4-201ENST00000423683 1078 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 RPS26P41-201ENST00000450370 284 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 SEPT14P1-201ENST00000458703 648 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 RPS4XP20-201ENST00000505751 772 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC117525.1-201ENST00000515228 503 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 IGLVIV-64-201ENST00000518581 301 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 IGKV3D-34-201ENST00000522638 302 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC011840.5-201ENST00000582125 771 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 AL589674.2-201ENST00000604304 337 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 SNORA11.6-201ENST00000619030 128 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC005840.5-201ENST00000619166 599 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 AC090971.4-201ENST00000560291 1800 ntBASIC5.13□□□□□ -1.59
VPS39Q96JC1 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS39Q96JC1 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS39Q96JC1 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC090017.1-201ENST00000548612 1779 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AL513325.1-201ENST00000417716 1034 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 AL139148.1-201ENST00000427122 680 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC012512.1-201ENST00000446594 718 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 AL157385.1-201ENST00000446973 268 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 EIF4A1P11-201ENST00000451239 222 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AL136038.1-201ENST00000497246 351 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC105031.1-201ENST00000518550 476 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 LSM3P2-201ENST00000551246 273 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 SNORD95-201ENST00000579879 68 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC123786.2-201ENST00000603459 275 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 AP005432.2-201ENST00000608162 586 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 BNIP3P41-202ENST00000616656 861 ntBASIC5.12□□□□□ -1.59
VPS39Q96JC1 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms