Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RPL21P132-201ENST00000331267 462 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RNU6-451P-201ENST00000362921 107 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RNU6-707P-201ENST00000364647 95 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 SNORA32.2-201ENST00000384049 122 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AL133260.1-201ENST00000405720 405 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 NPM1P40-201ENST00000412758 733 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 HMGB3P12-201ENST00000438745 556 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 MTND6P18-201ENST00000439477 513 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RPS26P11-201ENST00000463445 348 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC023598.1-201ENST00000472521 361 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RPS26P6-201ENST00000475156 348 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RN7SL568P-201ENST00000493069 298 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 APOBEC3AP1-201ENST00000511396 287 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC022296.2-201ENST00000512424 202 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 IGLVV-66-201ENST00000523818 341 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC005832.3-201ENST00000537929 631 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC063950.1-201ENST00000552036 308 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC007375.1-201ENST00000554513 578 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC233699.1-201ENST00000569955 1168 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RPS11-205ENST00000599561 430 ntTSL 5 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AC099676.1-201ENST00000608886 657 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AP000648.2-201ENST00000624182 404 ntBASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 NAA50-211ENST00000630058 177 ntTSL 5 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 ZNF846-202ENST00000586293 1621 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 ZIM3-201ENST00000269834 2627 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 CCDC152-201ENST00000361970 3431 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
NPAS3Q8IXF0 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 KARSP1-201ENST00000451871 1752 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AP002800.1-201ENST00000624982 2225 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 RNU6-26P-201ENST00000383985 107 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 U3.23-201ENST00000391132 200 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 MORN2-203ENST00000409131 544 ntTSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 Y_RNA.598-201ENST00000410480 95 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 RN7SKP29-201ENST00000410957 272 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC109780.2-201ENST00000413467 845 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 MTCO2P27-201ENST00000420740 428 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 RPL5P6-201ENST00000425640 886 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC002069.1-201ENST00000429649 1159 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 PMS2P9-201ENST00000441237 515 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 OR51P1P-201ENST00000447547 942 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AL121578.2-201ENST00000448797 447 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC234771.3-201ENST00000454984 622 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 RNU6-420P-201ENST00000458780 107 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 MRPS17P3-201ENST00000465453 385 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 HMGB3P17-201ENST00000504195 649 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 NPM1P21-201ENST00000513394 762 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC112206.3-201ENST00000514578 389 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 RN7SKP256-201ENST00000517201 314 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AP005597.2-201ENST00000526238 341 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 OR4A45P-201ENST00000529954 901 ntBASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms