Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNORA84-201ENST00000459229 133 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 AC020593.1-201ENST00000507399 299 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
COL4A4P53420 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.16□□□□□ -1.58
COL4A4P53420 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.16□□□□□ -1.58
COL4A4P53420 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.16□□□□□ -1.58
COL4A4P53420 AC106785.1-201ENST00000565935 262 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.16□□□□□ -1.58
COL4A4P53420 MIR4429-201ENST00000580105 73 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 AC008833.1-201ENST00000611633 691 ntBASIC5.16□□□□□ -1.58
COL4A4P53420 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.16□□□□□ -1.58
COL4A4P53420 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A4P53420 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.16□□□□□ -1.58
COL4A4P53420 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A4P53420 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL4A4P53420 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A4P53420 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC5.16□□□□□ -1.58
COL4A4P53420 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A4P53420 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A4P53420 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.16□□□□□ -1.58
COL4A4P53420 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A4P53420 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A4P53420 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A4P53420 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
COL4A4P53420 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A4P53420 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A4P53420 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
COL4A4P53420 UQCRBP1-201ENST00000421129 336 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.15□□□□□ -1.58
COL4A4P53420 AC097523.2-201ENST00000435551 652 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.15□□□□□ -1.58
COL4A4P53420 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.15□□□□□ -1.58
COL4A4P53420 CYCSP34-201ENST00000458172 304 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 RN7SL517P-201ENST00000462240 305 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 AC010618.1-201ENST00000469924 477 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 AC109635.6-201ENST00000525487 1113 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 MED28P5-201ENST00000528254 438 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.15□□□□□ -1.58
COL4A4P53420 AC006349.1-201ENST00000555526 235 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 MIR3138-201ENST00000585238 82 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.15□□□□□ -1.58
COL4A4P53420 Z95327.3-201ENST00000610385 572 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 AC004232.3-201ENST00000622977 525 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 AC087821.1-201ENST00000623639 567 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 FRG1EP-201ENST00000634469 770 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 OR8B1P-202ENST00000641132 1178 ntBASIC5.15□□□□□ -1.58
COL4A4P53420 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.15□□□□□ -1.58
COL4A4P53420 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A4P53420 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.15□□□□□ -1.58
COL4A4P53420 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
COL4A4P53420 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A4P53420 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 AC120338.1-201ENST00000625074 1541 ntBASIC5.15□□□□□ -1.59
COL4A4P53420 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
COL4A4P53420 AC104333.2-201ENST00000422630 192 ntBASIC5.15□□□□□ -1.59
COL4A4P53420 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.15□□□□□ -1.59
COL4A4P53420 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.15□□□□□ -1.59
COL4A4P53420 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.15□□□□□ -1.59
COL4A4P53420 AC114755.5-201ENST00000447760 831 ntBASIC5.15□□□□□ -1.59
COL4A4P53420 RPL23AP24-201ENST00000458203 385 ntBASIC5.15□□□□□ -1.59
COL4A4P53420 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.15□□□□□ -1.59
COL4A4P53420 MIR5699-201ENST00000578903 90 ntBASIC5.15□□□□□ -1.59
COL4A4P53420 AC093765.1-201ENST00000603758 881 ntBASIC5.15□□□□□ -1.59
COL4A4P53420 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A4P53420 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 AL731566.1-201ENST00000620490 1937 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 ST13P16-201ENST00000401760 781 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.14□□□□□ -1.59
COL4A4P53420 VTI1BP4-201ENST00000427516 527 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.14□□□□□ -1.59
COL4A4P53420 BMS1P19-201ENST00000433925 393 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.14□□□□□ -1.59
COL4A4P53420 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.14□□□□□ -1.59
COL4A4P53420 AC245028.2-201ENST00000458673 253 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 IGLVIV-65-201ENST00000517313 360 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.14□□□□□ -1.59
COL4A4P53420 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.14□□□□□ -1.59
COL4A4P53420 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.14□□□□□ -1.59
COL4A4P53420 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms