Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXA1P49639 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXA1P49639 AL603865.2-201ENST00000401679 213 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 DDX18P3-201ENST00000404856 2007 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AP002530.1-201ENST00000405705 684 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 SSR1P2-201ENST00000415208 787 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 PTP4A1P7-201ENST00000423476 514 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 PNRC2P1-201ENST00000423940 420 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXA1P49639 DEFB130D-201ENST00000426866 237 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 TUBB4BP6-201ENST00000437576 479 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC069540.1-201ENST00000446320 988 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AL157827.1-201ENST00000447622 132 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 RPL7AP28-201ENST00000464513 571 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 RN7SL269P-201ENST00000467795 305 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXA1P49639 RN7SL362P-201ENST00000494228 267 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 AC008427.1-201ENST00000503102 655 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 CDH12P2-201ENST00000504393 298 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXA1P49639 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC016559.2-201ENST00000510759 359 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC021193.1-201ENST00000511607 420 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 RN7SKP46-201ENST00000515942 234 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 RN7SKP34-201ENST00000516142 244 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 MTCYBP19-201ENST00000517463 1124 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 TRIM51GP-201ENST00000534741 1350 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 LINC01355-201ENST00000566551 5444 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC002519.2-203ENST00000567043 837 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC106734.1-201ENST00000568646 663 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXA1P49639 RN7SL622P-201ENST00000585292 275 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 WBP1LP12-201ENST00000604449 331 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC025175.1-201ENST00000606482 759 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AL158196.1-201ENST00000616786 434 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC131238.1-201ENST00000617135 328 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC244100.4-201ENST00000617747 388 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.59□□□□□ -1.67
HOXA1P49639 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 AP001052.1-201ENST00000626421 99 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC006927.2-201ENST00000639256 389 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
HOXA1P49639 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.59□□□□□ -1.68
HOXA1P49639 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
HOXA1P49639 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
HOXA1P49639 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
HOXA1P49639 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.68
HOXA1P49639 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
HOXA1P49639 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 MTND5P23-201ENST00000430812 1655 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXA1P49639 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXA1P49639 MIR130A-201ENST00000385274 89 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
HOXA1P49639 RNU6-244P-201ENST00000391028 104 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 RNA5SP105-201ENST00000391123 113 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 RNA5SP241-201ENST00000391326 114 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 ATP5F1P2-201ENST00000398143 760 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 YWHAZP6-201ENST00000399764 738 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 RPL21P67-201ENST00000402896 478 ntBASIC4.58□□□□□ -1.68
HOXA1P49639 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXA1P49639 AL096711.1-201ENST00000404780 554 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms