Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC6.44□□□□□ -1.38
COL8A1P27658 P2RY14-201ENST00000309170 2513 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 GDI2P1-201ENST00000429312 1336 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 GUCY2GP-201ENST00000479705 3222 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 MAPK10-290ENST00000641237 2826 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 AC026464.2-201ENST00000567834 2421 ntBASIC6.44□□□□□ -1.38
COL8A1P27658 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL8A1P27658 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
COL8A1P27658 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 ADGRE1-201ENST00000250572 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 SOX6-210ENST00000528252 2707 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 TNFAIP8-204ENST00000503646 2502 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 RERE-203ENST00000400907 2973 ntTSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 MRPS31P5-201ENST00000416599 3494 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 AC127502.2-201ENST00000602663 2351 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 PSMC2-203ENST00000435765 3054 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 GTF2H1-210ENST00000530496 1700 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC6.43□□□□□ -1.38
COL8A1P27658 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 SOSTDC1-202ENST00000396652 2411 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL8A1P27658 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 OR4A15-201ENST00000314706 1035 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 STAG3L4-201ENST00000352103 530 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 Y_RNA.158-201ENST00000363651 101 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 RN7SKP208-201ENST00000365474 361 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 THEM5-201ENST00000368817 984 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 RNU6-1263P-201ENST00000384601 106 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 MIR555-201ENST00000384987 96 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 MS4A3-203ENST00000395032 867 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 RPA3-203ENST00000401447 414 ntTSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 CSE1L-AS1-201ENST00000417781 556 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.43□□□□□ -1.38
COL8A1P27658 BLOC1S2P1-201ENST00000428431 301 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 RAB9AP5-201ENST00000437794 597 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 RPL32P28-201ENST00000443577 397 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 RAB9AP2-201ENST00000443911 597 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AC073415.1-201ENST00000449240 153 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 PPIAP20-201ENST00000449839 135 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 CALM1P2-201ENST00000452941 448 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 DNAJB5P1-201ENST00000454004 806 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AC015820.1-201ENST00000473882 321 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AC068587.1-201ENST00000483613 781 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 AC114324.2-202ENST00000503812 134 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 Y_RNA.672-201ENST00000516289 104 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 RNU2-46P-201ENST00000517038 113 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 IGLVIV-59-201ENST00000520218 250 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 NRBF2P4-201ENST00000520874 850 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL8A1P27658 MYL6-211ENST00000548580 528 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 AC079075.1-201ENST00000559543 878 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 ZNF561-AS1-208ENST00000592851 782 ntTSL 3 BASIC6.43□□□□□ -1.38
COL8A1P27658 BMS1P7-201ENST00000602440 1052 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 AC115286.1-201ENST00000604298 434 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.43□□□□□ -1.38
COL8A1P27658 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC6.43□□□□□ -1.38
COL8A1P27658 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 ABLIM3-207ENST00000508983 2011 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 STXBP5-AS1-209ENST00000606831 2025 ntTSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL8A1P27658 UGT2B28-201ENST00000335568 1833 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL8A1P27658 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms