Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HMGA1P17096 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.96□□□□□ -1.62
HMGA1P17096 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.96□□□□□ -1.62
HMGA1P17096 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HMGA1P17096 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 ZFRP1-201ENST00000457579 2970 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.95□□□□□ -1.62
HMGA1P17096 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.95□□□□□ -1.62
HMGA1P17096 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.95□□□□□ -1.62
HMGA1P17096 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 AC093671.1-201ENST00000624981 2929 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.95□□□□□ -1.62
HMGA1P17096 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
HMGA1P17096 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 CNOT7P1-201ENST00000429006 852 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.95□□□□□ -1.62
HMGA1P17096 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.95□□□□□ -1.62
HMGA1P17096 PPP1R11P1-201ENST00000486095 376 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.95□□□□□ -1.62
HMGA1P17096 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.95□□□□□ -1.62
HMGA1P17096 AC034205.1-201ENST00000520621 638 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.95□□□□□ -1.62
HMGA1P17096 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.95□□□□□ -1.62
HMGA1P17096 AL049830.4-201ENST00000555149 351 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.95□□□□□ -1.62
HMGA1P17096 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.95□□□□□ -1.62
HMGA1P17096 RPL26P30-202ENST00000602923 645 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 AC093765.1-201ENST00000603758 881 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.95□□□□□ -1.62
HMGA1P17096 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.95□□□□□ -1.62
HMGA1P17096 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.95□□□□□ -1.62
HMGA1P17096 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.95□□□□□ -1.62
HMGA1P17096 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
HMGA1P17096 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HMGA1P17096 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HMGA1P17096 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGA1P17096 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGA1P17096 AC011755.1-201ENST00000623763 2049 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGA1P17096 MIR129-1-201ENST00000384972 72 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 AL590762.2-201ENST00000395798 571 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 RAB28P1-201ENST00000411517 641 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 AC009480.2-201ENST00000422916 432 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 RPEP3-201ENST00000425462 676 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 RPL18P10-201ENST00000425606 538 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGA1P17096 AC012512.1-201ENST00000446594 718 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGA1P17096 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGA1P17096 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGA1P17096 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGA1P17096 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGA1P17096 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGA1P17096 FKBP1BP1-201ENST00000553366 325 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HMGA1P17096 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGA1P17096 MIR4660-201ENST00000583549 74 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 AC012414.7-202ENST00000622705 1090 ntBASIC4.94□□□□□ -1.62
HMGA1P17096 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HMGA1P17096 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGA1P17096 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.94□□□□□ -1.62
HMGA1P17096 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
HMGA1P17096 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HMGA1P17096 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HMGA1P17096 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGA1P17096 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
HMGA1P17096 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGA1P17096 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGA1P17096 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGA1P17096 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
HMGA1P17096 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC4.93□□□□□ -1.62
HMGA1P17096 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGA1P17096 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGA1P17096 ARL4AP5-201ENST00000404372 599 ntBASIC4.93□□□□□ -1.62
HMGA1P17096 RN7SKP267-201ENST00000410381 285 ntBASIC4.93□□□□□ -1.62
HMGA1P17096 AC007738.1-201ENST00000413892 348 ntBASIC4.93□□□□□ -1.62
HMGA1P17096 VN1R37P-201ENST00000419096 748 ntBASIC4.93□□□□□ -1.62
HMGA1P17096 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGA1P17096 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGA1P17096 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGA1P17096 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGA1P17096 H2AFZP5-201ENST00000446960 382 ntBASIC4.93□□□□□ -1.62
HMGA1P17096 RPL36AP41-201ENST00000493820 306 ntBASIC4.93□□□□□ -1.62
HMGA1P17096 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGA1P17096 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGA1P17096 HPRT1P1-201ENST00000509498 657 ntBASIC4.93□□□□□ -1.62
HMGA1P17096 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.93□□□□□ -1.62
HMGA1P17096 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.93□□□□□ -1.62
HMGA1P17096 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGA1P17096 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.93□□□□□ -1.62
HMGA1P17096 AP005119.2-201ENST00000579735 1105 ntBASIC4.93□□□□□ -1.62
HMGA1P17096 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGA1P17096 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGA1P17096 AL034374.2-201ENST00000605281 548 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms