Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 ATG4AP1-201ENST00000416893 538 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 PDSS1P1-201ENST00000422953 1114 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 EI24P4-201ENST00000423683 1078 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 XKRYP6-201ENST00000440468 1116 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 XKRYP3-201ENST00000442113 1116 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 MTND6P5-201ENST00000448266 512 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 RPS17P2-201ENST00000461663 408 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AL133445.1-201ENST00000467051 452 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 OR52A4P-202ENST00000481634 799 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 EIF1P7-201ENST00000487533 337 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 RN7SKP5-201ENST00000517045 272 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC087272.1-201ENST00000523624 533 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC018552.1-201ENST00000562099 811 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC010245.2-201ENST00000606908 1167 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC096586.2-201ENST00000610260 441 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 RPSAP73-201ENST00000614820 330 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC067931.1-201ENST00000624190 671 ntBASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC28BQ9BUN5 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 SCARNA15-201ENST00000607520 4325 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC023490.2-201ENST00000359859 470 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 RNU1-149P-201ENST00000390870 161 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 RNA5SP339-201ENST00000390987 122 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 LRRC37BP1-201ENST00000398851 714 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AL592291.1-201ENST00000403830 352 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 HDGFP1-201ENST00000405943 252 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 SLC35E1P1-201ENST00000419313 864 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 EIF4HP2-201ENST00000424380 563 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AL390119.1-201ENST00000440329 312 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AL691482.1-201ENST00000453255 87 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 RANP1-206ENST00000455094 651 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 HMGB3P13-201ENST00000511263 607 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 Vault.2-201ENST00000516519 98 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC124856.1-201ENST00000600819 896 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC133552.5-201ENST00000604266 540 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC239803.2-201ENST00000610161 430 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC104820.1-201ENST00000624183 307 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC073593.1-201ENST00000624500 411 ntBASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC28BQ9BUN5 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.87□□□□□ -1.63
CCDC28BQ9BUN5 AC017104.4-201ENST00000636283 1592 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms