Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OR14L1P-202ENST00000641545 3009 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 RPL7P41-201ENST00000485823 957 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC023632.4-201ENST00000517783 191 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC026403.1-201ENST00000518938 295 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC068993.1-201ENST00000546724 589 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 RN7SL600P-201ENST00000581811 299 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 KRR1P1-201ENST00000419430 803 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC040958.1-201ENST00000561102 201 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC015712.7-201ENST00000615211 635 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 RNU1-132P-201ENST00000364300 164 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AL451142.1-201ENST00000375867 775 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 RPS7P7-201ENST00000463499 571 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 AC084757.4-201ENST00000616350 526 ntBASIC4.57□□□□□ -1.68
VPS13AQ96RL7 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS13AQ96RL7 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 TMSB10P2-201ENST00000416049 131 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 NFYAP1-201ENST00000431953 972 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 RPL23AP52-201ENST00000439311 478 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 RPL5P32-201ENST00000454085 879 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AC116562.1-201ENST00000485355 781 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 RNU1-6P-201ENST00000516290 144 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AC093014.1-201ENST00000548926 724 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AL683813.2-201ENST00000605245 502 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 U3.53-201ENST00000628922 216 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AC008758.3-201ENST00000507003 1829 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 IMPA1P1-201ENST00000510718 842 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AP000827.1-201ENST00000527814 258 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AC079064.1-201ENST00000528365 362 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AC112230.1-201ENST00000604342 547 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AL133243.1-201ENST00000614487 366 ntBASIC4.56□□□□□ -1.68
VPS13AQ96RL7 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS13AQ96RL7 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 PTMAP5-201ENST00000393073 333 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 SCAND3P1-201ENST00000439854 1060 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC083899.1-201ENST00000454465 3819 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 RN7SL132P-201ENST00000478131 296 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms