Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CCDC42Q96M95 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC42Q96M95 Z95327.2-201ENST00000414579 1873 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC42Q96M95 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC42Q96M95 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC42Q96M95 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 MIR1282-201ENST00000408865 101 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 RNA5SP345-201ENST00000410646 108 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 NPM1P4-201ENST00000414095 812 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 AF186996.5-201ENST00000418098 904 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 VN1R37P-201ENST00000419096 748 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 AL121776.1-201ENST00000429337 372 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 AC245047.2-201ENST00000441060 530 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 Z80107.2-201ENST00000445127 392 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 TDGF1P1-201ENST00000445734 527 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 NDUFA5P8-201ENST00000449019 346 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 AL389915.2-201ENST00000454576 441 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC42Q96M95 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 AL353662.3-201ENST00000625131 237 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 MAPK10-303ENST00000641324 3959 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 CDY11P-201ENST00000447168 1651 ntBASIC5.2□□□□□ -1.58
CCDC42Q96M95 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC42Q96M95 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.2□□□□□ -1.58
CCDC42Q96M95 AC092435.4-201ENST00000623012 4159 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC42Q96M95 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC42Q96M95 NR1H5P-201ENST00000452683 1377 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC42Q96M95 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC42Q96M95 SNURFL-201ENST00000309296 343 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 MIR323A-201ENST00000362199 86 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 RN7SKP160-201ENST00000363804 340 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 AL080315.1-201ENST00000406055 466 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 AL137845.2-201ENST00000444292 988 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC42Q96M95 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC011225.1-201ENST00000457751 369 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC116562.1-201ENST00000485355 781 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC090568.1-201ENST00000509499 856 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 RNA5SP464-201ENST00000516251 108 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 AP000859.1-201ENST00000525536 307 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 AL049839.1-201ENST00000556151 657 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 AP000919.1-201ENST00000582850 985 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC011447.4-201ENST00000587562 111 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 AC010424.2-201ENST00000607594 443 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 MIR6861-201ENST00000618657 64 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC42Q96M95 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC42Q96M95 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.19□□□□□ -1.58
CCDC42Q96M95 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CCDC42Q96M95 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC42Q96M95 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC42Q96M95 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC42Q96M95 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 RN7SKP199-201ENST00000410325 305 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 RN7SL222P-201ENST00000476452 299 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 RN7SL319P-201ENST00000480656 221 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms