Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC073575.2-201ENST00000614212 627 ntBASIC4.9□□□□□ -1.63
SHMT2P34897 AC108359.1-201ENST00000616451 1211 ntBASIC4.9□□□□□ -1.63
SHMT2P34897 AL591926.8-201ENST00000616876 211 ntBASIC4.9□□□□□ -1.63
SHMT2P34897 BX005214.3-202ENST00000619809 325 ntBASIC4.9□□□□□ -1.63
SHMT2P34897 AC022106.2-201ENST00000620114 757 ntBASIC4.9□□□□□ -1.63
SHMT2P34897 MTCO1P15-201ENST00000529569 1526 ntBASIC4.9□□□□□ -1.63
SHMT2P34897 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
SHMT2P34897 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.9□□□□□ -1.63
SHMT2P34897 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
SHMT2P34897 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.9□□□□□ -1.63
SHMT2P34897 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.9□□□□□ -1.63
SHMT2P34897 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SHMT2P34897 SMG1P4-204ENST00000523028 4131 ntBASIC4.9□□□□□ -1.63
SHMT2P34897 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SHMT2P34897 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.9□□□□□ -1.63
SHMT2P34897 CDC27P2-201ENST00000425026 1922 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.89□□□□□ -1.63
SHMT2P34897 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.89□□□□□ -1.63
SHMT2P34897 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.89□□□□□ -1.63
SHMT2P34897 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
SHMT2P34897 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
SHMT2P34897 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SHMT2P34897 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC4.89□□□□□ -1.63
SHMT2P34897 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SHMT2P34897 AC007738.1-201ENST00000413892 348 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.89□□□□□ -1.63
SHMT2P34897 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.89□□□□□ -1.63
SHMT2P34897 RBMY2QP-201ENST00000429799 1147 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 BX323845.1-201ENST00000432417 179 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.89□□□□□ -1.63
SHMT2P34897 RPL34P20-201ENST00000442771 351 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 RN7SL610P-201ENST00000463845 291 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 OR2A3P-201ENST00000493774 953 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 HMGB3P16-201ENST00000508037 287 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.89□□□□□ -1.63
SHMT2P34897 RNA5SP43-201ENST00000516559 110 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.89□□□□□ -1.63
SHMT2P34897 AP000859.1-201ENST00000525536 307 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.89□□□□□ -1.63
SHMT2P34897 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.89□□□□□ -1.63
SHMT2P34897 MIR4646-201ENST00000580775 63 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.89□□□□□ -1.63
SHMT2P34897 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.89□□□□□ -1.63
SHMT2P34897 AC091905.4-201ENST00000623432 202 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.89□□□□□ -1.63
SHMT2P34897 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SHMT2P34897 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SHMT2P34897 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 AC133552.1-201ENST00000569988 4007 ntBASIC4.89□□□□□ -1.63
SHMT2P34897 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
SHMT2P34897 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SHMT2P34897 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.88□□□□□ -1.63
SHMT2P34897 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SHMT2P34897 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SHMT2P34897 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.88□□□□□ -1.63
SHMT2P34897 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.88□□□□□ -1.63
SHMT2P34897 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SHMT2P34897 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SHMT2P34897 RNA5SP428-201ENST00000365129 132 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 AC013442.1-201ENST00000397347 228 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 AL021331.1-201ENST00000402817 582 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 AP002530.1-201ENST00000405705 684 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 SNORA77-201ENST00000408716 125 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 RPS29P9-201ENST00000440360 171 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 AL137845.2-201ENST00000444292 988 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.88□□□□□ -1.63
SHMT2P34897 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.88□□□□□ -1.63
SHMT2P34897 IGHV5-78-201ENST00000450948 295 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 RPS4XP12-201ENST00000461747 709 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 OR10D4P-201ENST00000525892 951 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 BNIP3P1-201ENST00000547295 580 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.88□□□□□ -1.63
SHMT2P34897 AL512310.9-201ENST00000553311 948 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.88□□□□□ -1.63
SHMT2P34897 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.88□□□□□ -1.63
SHMT2P34897 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.88□□□□□ -1.63
SHMT2P34897 ZNF652P1-201ENST00000442420 1309 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.88□□□□□ -1.63
SHMT2P34897 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 353.3 ms