Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA9P31269 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.24□□□□□ -1.57
HOXA9P31269 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA9P31269 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA9P31269 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA9P31269 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA9P31269 SAMMSON-213ENST00000641336 1521 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA9P31269 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA9P31269 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA9P31269 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HOXA9P31269 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA9P31269 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA9P31269 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA9P31269 MIR298-201ENST00000401212 88 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 FABP12P1-201ENST00000401911 322 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 AC004074.1-201ENST00000421810 1063 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA9P31269 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA9P31269 RPL36AP15-201ENST00000444514 266 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 AC004980.3-201ENST00000447046 365 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 UBE2V2P4-201ENST00000447495 259 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA9P31269 RN7SL459P-201ENST00000481078 302 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA9P31269 C1GALT1P3-201ENST00000522049 819 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXA9P31269 AP000859.1-201ENST00000525536 307 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA9P31269 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA9P31269 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA9P31269 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.23□□□□□ -1.57
HOXA9P31269 AL359219.2-201ENST00000555184 348 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HOXA9P31269 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA9P31269 AC068790.4-201ENST00000602474 263 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 AC074140.1-201ENST00000621617 208 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA9P31269 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA9P31269 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA9P31269 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA9P31269 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.23□□□□□ -1.57
HOXA9P31269 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA9P31269 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
HOXA9P31269 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA9P31269 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
HOXA9P31269 HMGN2P27-201ENST00000427352 270 ntBASIC5.22□□□□□ -1.57
HOXA9P31269 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXA9P31269 DNAJC19P7-201ENST00000428811 344 ntBASIC5.22□□□□□ -1.57
HOXA9P31269 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA9P31269 NRBF2P3-201ENST00000432731 865 ntBASIC5.22□□□□□ -1.57
HOXA9P31269 RPL21P133-201ENST00000443666 476 ntBASIC5.22□□□□□ -1.57
HOXA9P31269 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA9P31269 AC091180.1-201ENST00000462104 372 ntBASIC5.22□□□□□ -1.57
HOXA9P31269 RPL23AP72-201ENST00000492447 435 ntBASIC5.22□□□□□ -1.57
HOXA9P31269 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA9P31269 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA9P31269 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA9P31269 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA9P31269 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA9P31269 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA9P31269 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA9P31269 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA9P31269 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
HOXA9P31269 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA9P31269 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA9P31269 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
HOXA9P31269 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
HOXA9P31269 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
HOXA9P31269 ABCC13-202ENST00000463099 3842 ntBASIC5.21□□□□□ -1.57
HOXA9P31269 ECM1P2-201ENST00000503354 1577 ntBASIC5.21□□□□□ -1.57
HOXA9P31269 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA9P31269 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA9P31269 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA9P31269 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXA9P31269 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA9P31269 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA9P31269 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA9P31269 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA9P31269 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA9P31269 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXA9P31269 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXA9P31269 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA9P31269 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
HOXA9P31269 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
HOXA9P31269 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA9P31269 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA9P31269 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA9P31269 AC012339.2-201ENST00000523996 453 ntBASIC5.21□□□□□ -1.58
HOXA9P31269 MORF4L1P3-201ENST00000525966 950 ntBASIC5.21□□□□□ -1.58
HOXA9P31269 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXA9P31269 AC008126.1-201ENST00000549019 480 ntBASIC5.21□□□□□ -1.58
HOXA9P31269 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA9P31269 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA9P31269 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA9P31269 AC209154.1-201ENST00000582156 337 ntBASIC5.21□□□□□ -1.58
HOXA9P31269 AC006272.2-201ENST00000594725 163 ntBASIC5.21□□□□□ -1.58
HOXA9P31269 AC012414.7-202ENST00000622705 1090 ntBASIC5.21□□□□□ -1.58
HOXA9P31269 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.21□□□□□ -1.58
HOXA9P31269 AC073869.10-201ENST00000642016 354 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms