Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
USF1P22415 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 RNA5SP241-201ENST00000391326 114 ntBASIC4.39□□□□□ -1.71
USF1P22415 VDAC2P1-201ENST00000399358 958 ntBASIC4.39□□□□□ -1.71
USF1P22415 AL078599.1-201ENST00000402075 293 ntBASIC4.39□□□□□ -1.71
USF1P22415 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC4.39□□□□□ -1.71
USF1P22415 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.39□□□□□ -1.71
USF1P22415 AL138787.1-202ENST00000437804 898 ntBASIC4.39□□□□□ -1.71
USF1P22415 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.39□□□□□ -1.71
USF1P22415 RPL31P44-201ENST00000447680 377 ntBASIC4.39□□□□□ -1.71
USF1P22415 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.39□□□□□ -1.71
USF1P22415 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.39□□□□□ -1.71
USF1P22415 AC093890.1-201ENST00000502554 540 ntBASIC4.39□□□□□ -1.71
USF1P22415 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.39□□□□□ -1.71
USF1P22415 AC098976.1-201ENST00000513014 541 ntBASIC4.39□□□□□ -1.71
USF1P22415 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.39□□□□□ -1.71
USF1P22415 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC4.39□□□□□ -1.71
USF1P22415 RNU4-18P-201ENST00000516751 149 ntBASIC4.39□□□□□ -1.71
USF1P22415 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.39□□□□□ -1.71
USF1P22415 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.39□□□□□ -1.71
USF1P22415 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.39□□□□□ -1.71
USF1P22415 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.39□□□□□ -1.71
USF1P22415 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 AP000769.2-201ENST00000602344 396 ntBASIC4.39□□□□□ -1.71
USF1P22415 BNIP3P41-202ENST00000616656 861 ntBASIC4.39□□□□□ -1.71
USF1P22415 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 MAPK10-263ENST00000641052 4307 ntBASIC4.39□□□□□ -1.71
USF1P22415 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.39□□□□□ -1.71
USF1P22415 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USF1P22415 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
USF1P22415 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
USF1P22415 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.39□□□□□ -1.71
USF1P22415 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.38□□□□□ -1.71
USF1P22415 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
USF1P22415 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 AC104623.2-202ENST00000623477 4002 ntBASIC4.38□□□□□ -1.71
USF1P22415 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 RNU6-729P-201ENST00000384399 107 ntBASIC4.38□□□□□ -1.71
USF1P22415 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
USF1P22415 DBIP1-201ENST00000401435 260 ntBASIC4.38□□□□□ -1.71
USF1P22415 NUDT19P3-201ENST00000404698 555 ntBASIC4.38□□□□□ -1.71
USF1P22415 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.38□□□□□ -1.71
USF1P22415 GJA6P-201ENST00000415117 1042 ntBASIC4.38□□□□□ -1.71
USF1P22415 DDX39BP1-205ENST00000422507 192 ntBASIC4.38□□□□□ -1.71
USF1P22415 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 AC017019.1-201ENST00000426129 261 ntBASIC4.38□□□□□ -1.71
USF1P22415 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.38□□□□□ -1.71
USF1P22415 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.38□□□□□ -1.71
USF1P22415 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 RBMY2TP-201ENST00000451162 947 ntBASIC4.38□□□□□ -1.71
USF1P22415 AC079168.1-201ENST00000458741 345 ntBASIC4.38□□□□□ -1.71
USF1P22415 AC092324.1-201ENST00000468671 324 ntBASIC4.38□□□□□ -1.71
USF1P22415 AC020779.1-201ENST00000478757 796 ntBASIC4.38□□□□□ -1.71
USF1P22415 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.38□□□□□ -1.71
USF1P22415 AC022133.1-201ENST00000490961 571 ntBASIC4.38□□□□□ -1.71
USF1P22415 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 RN7SL591P-201ENST00000496150 292 ntBASIC4.38□□□□□ -1.71
USF1P22415 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.38□□□□□ -1.71
USF1P22415 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.38□□□□□ -1.71
USF1P22415 SCARNA20.4-201ENST00000516969 131 ntBASIC4.38□□□□□ -1.71
USF1P22415 AC022360.1-201ENST00000521058 340 ntBASIC4.38□□□□□ -1.71
USF1P22415 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.38□□□□□ -1.71
USF1P22415 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC4.38□□□□□ -1.71
USF1P22415 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.38□□□□□ -1.71
USF1P22415 MIR4472-2-201ENST00000582069 67 ntBASIC4.38□□□□□ -1.71
USF1P22415 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.38□□□□□ -1.71
USF1P22415 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.38□□□□□ -1.71
USF1P22415 AL137246.1-201ENST00000607072 977 ntBASIC4.38□□□□□ -1.71
USF1P22415 AC244517.3-201ENST00000616254 1235 ntBASIC4.38□□□□□ -1.71
USF1P22415 AC010435.1-201ENST00000623353 1177 ntBASIC4.38□□□□□ -1.71
USF1P22415 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.38□□□□□ -1.71
USF1P22415 AC079298.1-201ENST00000625026 1619 ntBASIC4.38□□□□□ -1.71
USF1P22415 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.38□□□□□ -1.71
USF1P22415 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
USF1P22415 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.38□□□□□ -1.71
USF1P22415 CASC19-221ENST00000641309 1382 ntBASIC4.38□□□□□ -1.71
USF1P22415 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
USF1P22415 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USF1P22415 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms