Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 EPHB2-204ENST00000400191 10816 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 ADAM24P-201ENST00000398655 2101 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC4.82□□□□□ -1.64
COL6A3P12111 PRICKLE2-205ENST00000638394 9956 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A3P12111 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A3P12111 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.81□□□□□ -1.64
COL6A3P12111 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A3P12111 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.81□□□□□ -1.64
COL6A3P12111 AP001160.4-201ENST00000596971 382 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 AC007546.1-201ENST00000619452 559 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
COL6A3P12111 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 SCN11A-201ENST00000302328 6500 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
COL6A3P12111 ZBTB40-202ENST00000375647 8685 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 SCAND2P-201ENST00000348993 8975 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A3P12111 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC4.81□□□□□ -1.64
COL6A3P12111 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
COL6A3P12111 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL6A3P12111 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A3P12111 NDUFA5P1-201ENST00000433858 341 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A3P12111 RPL5P23-201ENST00000496040 868 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 RPS27AP13-201ENST00000498403 237 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A3P12111 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A3P12111 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A3P12111 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
COL6A3P12111 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL6A3P12111 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 SNORD8-201ENST00000363915 110 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL6A3P12111 RPL11P3-201ENST00000395256 523 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 RPL23AP52-201ENST00000439311 478 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 HSPD1P15-201ENST00000505573 1122 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 RNU1-6P-201ENST00000516290 144 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.81□□□□□ -1.64
COL6A3P12111 AC243960.7-201ENST00000623532 707 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 AP001157.1-201ENST00000550837 2339 ntBASIC4.81□□□□□ -1.64
COL6A3P12111 IYD-201ENST00000229447 7513 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A3P12111 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL6A3P12111 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
COL6A3P12111 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 AC073410.1-201ENST00000435125 589 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.8□□□□□ -1.64
COL6A3P12111 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.8□□□□□ -1.64
COL6A3P12111 AC027309.2-201ENST00000520566 192 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.8□□□□□ -1.64
COL6A3P12111 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
COL6A3P12111 MFSD8-236ENST00000641509 4050 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 OR8G1-202ENST00000641972 5055 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
COL6A3P12111 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
COL6A3P12111 TRPS1-201ENST00000220888 5480 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
COL6A3P12111 AL583835.1-201ENST00000399570 407 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 RPL21P65-201ENST00000406094 466 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A3P12111 AC115115.1-201ENST00000449927 248 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 AL133244.1-201ENST00000456007 258 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 AC090515.3-201ENST00000560431 315 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC4.8□□□□□ -1.64
COL6A3P12111 AC011626.1-201ENST00000604710 562 ntBASIC4.8□□□□□ -1.64
COL6A3P12111 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL6A3P12111 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A3P12111 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL6A3P12111 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC4.8□□□□□ -1.64
COL6A3P12111 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 GABRA4-201ENST00000264318 11973 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A3P12111 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL6A3P12111 NFYAP1-201ENST00000431953 972 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.79□□□□□ -1.64
COL6A3P12111 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC4.79□□□□□ -1.64
COL6A3P12111 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A3P12111 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL6A3P12111 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
COL6A3P12111 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms