Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SKA3Q8IX90 MTCO1P8-201ENST00000416914 1523 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 PABPC1P6-201ENST00000445594 1829 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 DUTP5-201ENST00000406790 469 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 RN7SKP199-201ENST00000410325 305 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 AP000534.2-201ENST00000412729 568 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 EI24P4-201ENST00000423683 1078 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 GAPDHP58-201ENST00000438477 1006 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AL031584.1-201ENST00000447169 754 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC002553.2-201ENST00000453217 340 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 RN7SL172P-201ENST00000460535 303 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC009127.1-201ENST00000467090 155 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 RN7SL30P-201ENST00000488416 306 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC072052.1-201ENST00000496556 306 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 RFPL4AP3-201ENST00000515267 345 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 RNU6-751P-201ENST00000516382 101 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 AP002373.2-201ENST00000541631 1060 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 AL049874.4-201ENST00000557593 255 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 PRPF19P1-201ENST00000584766 898 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC126915.2-201ENST00000610957 190 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 MIR6826-201ENST00000617808 98 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC118658.2-201ENST00000618697 459 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC004808.2-201ENST00000627965 773 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 AL355480.1-201ENST00000629041 99 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 AC006210.2-201ENST00000367074 1545 ntBASIC4.56□□□□□ -1.68
SKA3Q8IX90 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SKA3Q8IX90 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SKA3Q8IX90 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC092111.2-201ENST00000611627 1414 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
SKA3Q8IX90 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SKA3Q8IX90 RNA5SP223-201ENST00000365174 120 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SKA3Q8IX90 RNU6-171P-201ENST00000384354 107 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 MIR223-201ENST00000385204 110 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC005522.1-201ENST00000395416 346 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 MIR1182-201ENST00000408363 97 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 RPL12P9-201ENST00000412942 488 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 PCNPP4-201ENST00000414817 517 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 GTF3AP1-201ENST00000416942 1004 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC244453.4-201ENST00000419150 388 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC104333.2-201ENST00000422630 192 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AL355433.1-201ENST00000422804 300 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AL034379.1-201ENST00000423216 253 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 TMX2P1-201ENST00000436507 708 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AL450263.2-201ENST00000439400 589 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 CYCSP24-201ENST00000445119 316 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 BX842559.2-201ENST00000451418 605 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 OR52A4P-203ENST00000498233 1014 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC024940.3-201ENST00000538551 316 ntBASIC4.55□□□□□ -1.68
SKA3Q8IX90 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms