Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PFN1P6-201ENST00000476786 399 ntBASIC4.56□□□□□ -1.68
CDX1P47902 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 AC104687.1-201ENST00000485829 412 ntBASIC4.56□□□□□ -1.68
CDX1P47902 AC104109.1-201ENST00000498563 436 ntBASIC4.56□□□□□ -1.68
CDX1P47902 NENFP3-201ENST00000503735 313 ntBASIC4.56□□□□□ -1.68
CDX1P47902 AC106806.2-201ENST00000509365 500 ntBASIC4.56□□□□□ -1.68
CDX1P47902 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.56□□□□□ -1.68
CDX1P47902 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC4.56□□□□□ -1.68
CDX1P47902 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC4.56□□□□□ -1.68
CDX1P47902 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.56□□□□□ -1.68
CDX1P47902 AC078899.1-201ENST00000521432 1185 ntBASIC4.56□□□□□ -1.68
CDX1P47902 IGKV3D-34-201ENST00000522638 302 ntBASIC4.56□□□□□ -1.68
CDX1P47902 AC090022.1-201ENST00000546569 311 ntBASIC4.56□□□□□ -1.68
CDX1P47902 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.56□□□□□ -1.68
CDX1P47902 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC4.56□□□□□ -1.68
CDX1P47902 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC4.56□□□□□ -1.68
CDX1P47902 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC4.56□□□□□ -1.68
CDX1P47902 AC084759.1-201ENST00000561168 290 ntBASIC4.56□□□□□ -1.68
CDX1P47902 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.56□□□□□ -1.68
CDX1P47902 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.56□□□□□ -1.68
CDX1P47902 uc_338.26-201ENST00000612659 160 ntBASIC4.56□□□□□ -1.68
CDX1P47902 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC4.56□□□□□ -1.68
CDX1P47902 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.56□□□□□ -1.68
CDX1P47902 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC4.56□□□□□ -1.68
CDX1P47902 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.56□□□□□ -1.68
CDX1P47902 AC008691.1-209ENST00000642094 814 ntBASIC4.56□□□□□ -1.68
CDX1P47902 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 AC091305.2-201ENST00000624049 1576 ntBASIC4.56□□□□□ -1.68
CDX1P47902 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
CDX1P47902 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CDX1P47902 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
CDX1P47902 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
CDX1P47902 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.55□□□□□ -1.68
CDX1P47902 AP000756.2-201ENST00000624168 2567 ntBASIC4.55□□□□□ -1.68
CDX1P47902 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
CDX1P47902 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 RNU6-1005P-201ENST00000384519 107 ntBASIC4.55□□□□□ -1.68
CDX1P47902 RNU6-796P-201ENST00000391086 107 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AC093719.1-202ENST00000392735 373 ntBASIC4.55□□□□□ -1.68
CDX1P47902 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.55□□□□□ -1.68
CDX1P47902 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC4.55□□□□□ -1.68
CDX1P47902 AC092570.3-201ENST00000420113 693 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 RPL34P3-201ENST00000421454 338 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AC012519.1-201ENST00000424588 610 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC4.55□□□□□ -1.68
CDX1P47902 UBE2D3P3-201ENST00000426992 425 ntBASIC4.55□□□□□ -1.68
CDX1P47902 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.55□□□□□ -1.68
CDX1P47902 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.55□□□□□ -1.68
CDX1P47902 BX323845.3-201ENST00000428215 527 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.55□□□□□ -1.68
CDX1P47902 AC023141.8-201ENST00000442554 208 ntBASIC4.55□□□□□ -1.68
CDX1P47902 RPL7P55-201ENST00000450522 746 ntBASIC4.55□□□□□ -1.68
CDX1P47902 OR52E3P-201ENST00000452083 936 ntBASIC4.55□□□□□ -1.68
CDX1P47902 RNU6-1218P-201ENST00000458990 108 ntBASIC4.55□□□□□ -1.68
CDX1P47902 RNU1-88P-201ENST00000459274 128 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AL603882.1-201ENST00000463059 681 ntBASIC4.55□□□□□ -1.68
CDX1P47902 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.55□□□□□ -1.68
CDX1P47902 RPS17P15-201ENST00000475609 349 ntBASIC4.55□□□□□ -1.68
CDX1P47902 RN7SL809P-201ENST00000482040 297 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AC112518.2-201ENST00000508565 425 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AC133963.2-201ENST00000513686 578 ntBASIC4.55□□□□□ -1.68
CDX1P47902 GAPDHP62-201ENST00000515313 990 ntBASIC4.55□□□□□ -1.68
CDX1P47902 RNU6-347P-201ENST00000516658 105 ntBASIC4.55□□□□□ -1.68
CDX1P47902 CYCSP22-201ENST00000517555 339 ntBASIC4.55□□□□□ -1.68
CDX1P47902 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.55□□□□□ -1.68
CDX1P47902 IGKV1OR22-1-201ENST00000521497 360 ntBASIC4.55□□□□□ -1.68
CDX1P47902 BUD31P1-201ENST00000521828 359 ntBASIC4.55□□□□□ -1.68
CDX1P47902 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.55□□□□□ -1.68
CDX1P47902 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.55□□□□□ -1.68
CDX1P47902 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CDX1P47902 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC4.55□□□□□ -1.68
CDX1P47902 AC025260.1-201ENST00000548858 430 ntBASIC4.55□□□□□ -1.68
CDX1P47902 GNG2-208ENST00000554875 430 ntTSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC4.55□□□□□ -1.68
CDX1P47902 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CDX1P47902 AC012146.2-201ENST00000576545 416 ntBASIC4.55□□□□□ -1.68
CDX1P47902 ZNF92P3-201ENST00000596594 954 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AC010632.3-201ENST00000611377 369 ntBASIC4.55□□□□□ -1.68
CDX1P47902 AL359513.1-201ENST00000614364 557 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms