Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSH3P20585 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.19□□□□□ -1.58
MSH3P20585 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
MSH3P20585 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSH3P20585 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
MSH3P20585 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH3P20585 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 AC133552.1-201ENST00000569988 4007 ntBASIC5.18□□□□□ -1.58
MSH3P20585 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH3P20585 RARSP1-201ENST00000542842 1418 ntBASIC5.18□□□□□ -1.58
MSH3P20585 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 RNA5SP90-201ENST00000364801 99 ntBASIC5.18□□□□□ -1.58
MSH3P20585 RNA5SP223-201ENST00000365174 120 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AC007618.1-201ENST00000366455 732 ntBASIC5.18□□□□□ -1.58
MSH3P20585 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH3P20585 VN1R31P-201ENST00000417498 730 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
MSH3P20585 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH3P20585 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 GAPDHP58-201ENST00000438477 1006 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AC245047.2-201ENST00000441060 530 ntBASIC5.18□□□□□ -1.58
MSH3P20585 FAR2P1-206ENST00000449736 709 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AC079841.1-201ENST00000481228 950 ntBASIC5.18□□□□□ -1.58
MSH3P20585 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 AC023424.1-201ENST00000496058 459 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AC072052.1-201ENST00000496556 306 ntBASIC5.18□□□□□ -1.58
MSH3P20585 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH3P20585 AC106806.2-201ENST00000509365 500 ntBASIC5.18□□□□□ -1.58
MSH3P20585 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 AP003049.1-201ENST00000529418 457 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AC024940.3-201ENST00000538551 316 ntBASIC5.18□□□□□ -1.58
MSH3P20585 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.18□□□□□ -1.58
MSH3P20585 CR383656.14-201ENST00000551951 406 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH3P20585 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.18□□□□□ -1.58
MSH3P20585 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH3P20585 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 PRPF19P1-201ENST00000584766 898 ntBASIC5.18□□□□□ -1.58
MSH3P20585 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 AC006272.2-201ENST00000594725 163 ntBASIC5.18□□□□□ -1.58
MSH3P20585 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 OR4H6P-202ENST00000603819 340 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AP000240.1-201ENST00000609910 452 ntBASIC5.18□□□□□ -1.58
MSH3P20585 AC090527.3-201ENST00000619041 548 ntBASIC5.18□□□□□ -1.58
MSH3P20585 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.18□□□□□ -1.58
MSH3P20585 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.18□□□□□ -1.58
MSH3P20585 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.18□□□□□ -1.58
MSH3P20585 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSH3P20585 AL512283.1-201ENST00000606756 1384 ntBASIC5.17□□□□□ -1.58
MSH3P20585 ZNF733P-202ENST00000444809 1573 ntBASIC5.17□□□□□ -1.58
MSH3P20585 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
MSH3P20585 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 U3.3-201ENST00000362986 216 ntBASIC5.17□□□□□ -1.58
MSH3P20585 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.17□□□□□ -1.58
MSH3P20585 AL353625.1-202ENST00000366273 571 ntBASIC5.17□□□□□ -1.58
MSH3P20585 RPL21P67-201ENST00000402896 478 ntBASIC5.17□□□□□ -1.58
MSH3P20585 DUTP5-201ENST00000406790 469 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AC098592.2-201ENST00000413158 265 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH3P20585 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.17□□□□□ -1.58
MSH3P20585 NOP56P2-201ENST00000447491 769 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AURKAPS1-201ENST00000451805 1212 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.17□□□□□ -1.58
MSH3P20585 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.17□□□□□ -1.58
MSH3P20585 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.17□□□□□ -1.58
MSH3P20585 RPS4XP12-201ENST00000461747 709 ntBASIC5.17□□□□□ -1.58
MSH3P20585 MYL12BP2-201ENST00000503948 512 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH3P20585 MTND3P24-201ENST00000506306 329 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms