Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL355375.2-201ENST00000574825 175 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 SLC14A1-214ENST00000589700 1022 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 DISC2.1-201ENST00000612827 205 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 RORA-202ENST00000309157 1908 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 IL31RA-206ENST00000447346 2577 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC245177.1-201ENST00000375625 2369 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC239585.1-201ENST00000375644 2369 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 AC097504.1-201ENST00000515103 2415 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 NUSAP1-210ENST00000560177 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 TCF12-206ENST00000543579 1809 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 MAPK10-319ENST00000641459 2542 ntBASIC7.71□□□□□ -1.18
LIMD1Q9UGP4 DHX57-203ENST00000457308 4859 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 CASC19-284ENST00000642142 1868 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 DCAF4L2-201ENST00000319675 3326 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 CACNB2-213ENST00000612134 3825 ntTSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 NMD3P1-201ENST00000439704 1488 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AF131215.2-201ENST00000531549 1710 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 OR4Q2-201ENST00000541415 2778 ntAPPRIS P5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 NAP1L4P1-201ENST00000319092 1157 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 Y_RNA.58-201ENST00000362807 102 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 Y_RNA.154-201ENST00000363624 102 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 RNY3P1-201ENST00000365085 102 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 RNY3-201ENST00000365484 102 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 Y_RNA.490-201ENST00000384413 102 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 RPSAP72-201ENST00000407020 358 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AL136100.1-201ENST00000407696 330 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 RN7SKP140-201ENST00000411196 284 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 MRPL50P2-201ENST00000416821 482 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AL672212.1-201ENST00000422246 400 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC104837.2-201ENST00000427236 424 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 USP9YP15-201ENST00000442391 422 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 RPL31P15-201ENST00000449770 338 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 RPL31P11-202ENST00000454082 372 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 RNU6-261P-201ENST00000459506 102 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC021660.1-201ENST00000465006 554 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 RPL7P19-201ENST00000469948 618 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 GAPDHP61-201ENST00000507324 1005 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 Vault.3-201ENST00000516676 95 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC069061.2-201ENST00000580686 480 ntTSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC011468.4-201ENST00000603942 409 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC004853.1-201ENST00000604902 698 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 uc_338.5-201ENST00000611839 155 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AL355974.3-201ENST00000617383 467 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 CGA-206ENST00000630630 832 ntTSL 2 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 MIR1302-1-201ENST00000637932 143 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 EZH2-203ENST00000460911 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 SP140-203ENST00000392045 3246 ntAPPRIS P3 TSL 2 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 FKTN-202ENST00000357998 2404 ntTSL 5 BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 ZNF396-201ENST00000306346 2788 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 MAPK10-377ENST00000642006 2752 ntBASIC7.7□□□□□ -1.18
LIMD1Q9UGP4 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
LIMD1Q9UGP4 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms