Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.22□□□□□ -1.57
COL4A4P53420 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.22□□□□□ -1.57
COL4A4P53420 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 AC017079.1-201ENST00000333650 415 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 RNU4-39P-201ENST00000362455 127 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 RNA5SP397-201ENST00000391323 118 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 AL591848.1-201ENST00000413092 322 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.22□□□□□ -1.57
COL4A4P53420 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.22□□□□□ -1.57
COL4A4P53420 AL450023.3-201ENST00000440592 271 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 AL157385.1-201ENST00000446973 268 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 PPM1AP1-201ENST00000502740 1135 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 MYL12BP2-201ENST00000503948 512 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.22□□□□□ -1.57
COL4A4P53420 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 AC026688.1-201ENST00000520639 1168 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.22□□□□□ -1.57
COL4A4P53420 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.22□□□□□ -1.57
COL4A4P53420 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.22□□□□□ -1.57
COL4A4P53420 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.22□□□□□ -1.57
COL4A4P53420 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
COL4A4P53420 AC005191.1-201ENST00000603950 358 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 AL161637.1-201ENST00000622380 412 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.22□□□□□ -1.57
COL4A4P53420 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 ECM1P2-201ENST00000503354 1577 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 AL442639.1-201ENST00000625030 1899 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 AC012213.2-201ENST00000562917 4597 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC5.22□□□□□ -1.57
COL4A4P53420 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.22□□□□□ -1.57
COL4A4P53420 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.22□□□□□ -1.57
COL4A4P53420 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL4A4P53420 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.22□□□□□ -1.57
COL4A4P53420 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL4A4P53420 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC5.21□□□□□ -1.57
COL4A4P53420 AL136116.2-201ENST00000404020 785 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 ATG4AP1-201ENST00000416893 538 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 RPEP3-201ENST00000425462 676 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.21□□□□□ -1.57
COL4A4P53420 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.21□□□□□ -1.57
COL4A4P53420 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.21□□□□□ -1.57
COL4A4P53420 RN7SL244P-201ENST00000493405 297 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 MTCO1P35-201ENST00000515270 228 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 RNA5SP143-201ENST00000516936 115 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.21□□□□□ -1.57
COL4A4P53420 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.21□□□□□ -1.57
COL4A4P53420 AL049839.1-201ENST00000556151 657 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 AGGF1P9-201ENST00000561884 913 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 AL022401.1-201ENST00000619498 108 ntBASIC5.21□□□□□ -1.57
COL4A4P53420 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL4A4P53420 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL4A4P53420 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.21□□□□□ -1.57
COL4A4P53420 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL4A4P53420 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A4P53420 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.21□□□□□ -1.58
COL4A4P53420 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.21□□□□□ -1.58
COL4A4P53420 AC011755.1-201ENST00000623763 2049 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 SMG1P6-201ENST00000532337 2930 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A4P53420 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC5.21□□□□□ -1.58
COL4A4P53420 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.21□□□□□ -1.58
COL4A4P53420 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.21□□□□□ -1.58
COL4A4P53420 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A4P53420 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC5.21□□□□□ -1.58
COL4A4P53420 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A4P53420 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A4P53420 SNORA70.10-201ENST00000384515 134 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 SNORA48.7-201ENST00000391302 135 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 RAD23BP1-201ENST00000421404 1227 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 AL158073.1-201ENST00000426848 1104 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 MTND2P28-201ENST00000457540 1044 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.21□□□□□ -1.58
COL4A4P53420 AC091167.1-201ENST00000492017 396 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.21□□□□□ -1.58
COL4A4P53420 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.21□□□□□ -1.58
COL4A4P53420 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.21□□□□□ -1.58
COL4A4P53420 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.21□□□□□ -1.58
COL4A4P53420 AL133338.2-201ENST00000604292 736 ntBASIC5.21□□□□□ -1.58
COL4A4P53420 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.21□□□□□ -1.58
COL4A4P53420 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
COL4A4P53420 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A4P53420 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A4P53420 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC5.2□□□□□ -1.58
COL4A4P53420 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL4A4P53420 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms