Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC108475.1-201ENST00000507880 950 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC008565.1-201ENST00000509046 885 ntBASIC5.74□□□□□ -1.49
MSX2P35548 MRPS5P3-201ENST00000515577 166 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 RNA5SP418-201ENST00000515951 117 ntBASIC5.74□□□□□ -1.49
MSX2P35548 RNU2-30P-201ENST00000516209 141 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 IGHV4-55-201ENST00000520889 368 ntBASIC5.74□□□□□ -1.49
MSX2P35548 MTND4LP18-201ENST00000526864 291 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.74□□□□□ -1.49
MSX2P35548 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 AC010198.2-201ENST00000550612 259 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.74□□□□□ -1.49
MSX2P35548 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.74□□□□□ -1.49
MSX2P35548 AC010287.1-201ENST00000566916 357 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.74□□□□□ -1.49
MSX2P35548 AC060780.2-201ENST00000589047 198 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 SUMO2P14-201ENST00000604488 293 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 MIR6070-201ENST00000613967 103 ntBASIC5.74□□□□□ -1.49
MSX2P35548 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
MSX2P35548 AF246928.1-201ENST00000623768 87 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.74□□□□□ -1.49
MSX2P35548 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
MSX2P35548 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.74□□□□□ -1.49
MSX2P35548 CASC19-281ENST00000642118 1554 ntBASIC5.74□□□□□ -1.49
MSX2P35548 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.74□□□□□ -1.49
MSX2P35548 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
MSX2P35548 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC5.74□□□□□ -1.49
MSX2P35548 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSX2P35548 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX2P35548 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.73□□□□□ -1.49
MSX2P35548 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
MSX2P35548 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSX2P35548 FAM3C2-201ENST00000312214 681 ntBASIC5.73□□□□□ -1.49
MSX2P35548 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 RN7SKP186-201ENST00000365371 303 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.73□□□□□ -1.49
MSX2P35548 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC5.73□□□□□ -1.49
MSX2P35548 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 RNU6-1215P-201ENST00000384441 102 ntBASIC5.73□□□□□ -1.49
MSX2P35548 SNORA40.2-201ENST00000390847 128 ntBASIC5.73□□□□□ -1.49
MSX2P35548 RNA5SP105-201ENST00000391123 113 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC245096.1-201ENST00000413104 546 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC098592.1-201ENST00000419352 333 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC234781.4-201ENST00000419384 244 ntBASIC5.73□□□□□ -1.49
MSX2P35548 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX2P35548 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 NEK4P1-201ENST00000433383 879 ntBASIC5.73□□□□□ -1.49
MSX2P35548 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX2P35548 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX2P35548 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC5.73□□□□□ -1.49
MSX2P35548 RPL23AP60-201ENST00000450011 454 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 RPL12P39-201ENST00000455456 496 ntBASIC5.73□□□□□ -1.49
MSX2P35548 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX2P35548 RPSAP39-201ENST00000467439 883 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC022730.1-201ENST00000473114 568 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC117394.1-201ENST00000477323 567 ntBASIC5.73□□□□□ -1.49
MSX2P35548 OR11I1P-201ENST00000486033 954 ntBASIC5.73□□□□□ -1.49
MSX2P35548 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC5.73□□□□□ -1.49
MSX2P35548 CR383658.1-201ENST00000514609 734 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC096661.1-201ENST00000515870 822 ntBASIC5.73□□□□□ -1.49
MSX2P35548 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 RBMS2P1-201ENST00000525031 1226 ntBASIC5.73□□□□□ -1.49
MSX2P35548 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.73□□□□□ -1.49
MSX2P35548 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX2P35548 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSX2P35548 HMGN1P26-201ENST00000558737 303 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.73□□□□□ -1.49
MSX2P35548 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX2P35548 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX2P35548 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC5.73□□□□□ -1.49
MSX2P35548 MIR378H-201ENST00000579966 83 ntBASIC5.73□□□□□ -1.49
MSX2P35548 SYPL1P2-201ENST00000582878 727 ntBASIC5.73□□□□□ -1.49
MSX2P35548 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC5.73□□□□□ -1.49
MSX2P35548 BMS1P7-201ENST00000602440 1052 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms