Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.78□□□□□ -1.64
LMX1BO60663 AC093270.2-201ENST00000486157 792 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC231760.1-201ENST00000498002 260 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 IGBP1P4-201ENST00000503202 879 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC021193.1-201ENST00000511607 420 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.78□□□□□ -1.64
LMX1BO60663 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 CDC42P3-201ENST00000518493 633 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.78□□□□□ -1.64
LMX1BO60663 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.78□□□□□ -1.64
LMX1BO60663 NRBF2P4-201ENST00000520874 850 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC092709.1-201ENST00000521355 1045 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.78□□□□□ -1.64
LMX1BO60663 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.78□□□□□ -1.64
LMX1BO60663 OR4A43P-201ENST00000532938 908 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.78□□□□□ -1.64
LMX1BO60663 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.78□□□□□ -1.64
LMX1BO60663 OR11H3P-201ENST00000554547 982 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.78□□□□□ -1.64
LMX1BO60663 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.78□□□□□ -1.64
LMX1BO60663 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.78□□□□□ -1.64
LMX1BO60663 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC4.78□□□□□ -1.64
LMX1BO60663 AP001160.4-201ENST00000596971 382 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 AL133247.2-201ENST00000603236 482 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC098935.2-201ENST00000604222 466 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 AC005840.5-201ENST00000619166 599 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC084824.4-201ENST00000620106 731 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 AC007275.1-201ENST00000621243 671 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 AC135068.5-201ENST00000624197 983 ntBASIC4.78□□□□□ -1.64
LMX1BO60663 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.78□□□□□ -1.64
LMX1BO60663 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
LMX1BO60663 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LMX1BO60663 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.78□□□□□ -1.64
LMX1BO60663 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.65
LMX1BO60663 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 LINC02019-201ENST00000608605 2060 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.77□□□□□ -1.65
LMX1BO60663 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
LMX1BO60663 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 SEPT7P7-201ENST00000420492 1301 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 PABPC1P6-201ENST00000445594 1829 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
LMX1BO60663 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LMX1BO60663 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LMX1BO60663 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LMX1BO60663 RNA5SP319-201ENST00000362768 119 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 RN7SKP74-201ENST00000362849 309 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.77□□□□□ -1.65
LMX1BO60663 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LMX1BO60663 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LMX1BO60663 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LMX1BO60663 AL050305.1-201ENST00000399993 1230 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 PCNPP4-201ENST00000414817 517 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 MTND4LP21-201ENST00000415303 295 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LMX1BO60663 TRBV26OR9-2-201ENST00000432077 293 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.77□□□□□ -1.65
LMX1BO60663 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 ELOCP13-201ENST00000443934 329 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AC099063.2-201ENST00000446360 662 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 AL645937.3-201ENST00000453647 936 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 MTND2P6-201ENST00000455337 1030 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.77□□□□□ -1.65
LMX1BO60663 AC104164.3-201ENST00000467363 1258 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AC012123.2-201ENST00000485809 248 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.77□□□□□ -1.65
LMX1BO60663 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC4.77□□□□□ -1.65
LMX1BO60663 NDUFA5P12-201ENST00000503796 343 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 PCNAP1-201ENST00000505363 709 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.77□□□□□ -1.65
LMX1BO60663 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC4.77□□□□□ -1.65
LMX1BO60663 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.77□□□□□ -1.65
LMX1BO60663 HIGD1AP14-201ENST00000507617 282 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.77□□□□□ -1.65
LMX1BO60663 OR7E13P-201ENST00000526052 910 ntBASIC4.77□□□□□ -1.65
LMX1BO60663 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
LMX1BO60663 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.77□□□□□ -1.65
LMX1BO60663 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.77□□□□□ -1.65
LMX1BO60663 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
LMX1BO60663 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
LMX1BO60663 MIMT1-201ENST00000597105 1050 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms