Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AC138907.8-201ENST00000623981 2256 ntBASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC39Q9UFE4 AL591135.1-201ENST00000401578 5914 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AC092638.1-201ENST00000411966 1275 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 MTCYBP38-201ENST00000417160 1123 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 RPL21P50-201ENST00000417698 477 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 MTCO2P34-201ENST00000421994 607 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AC241584.1-201ENST00000438469 1241 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 KRT8P51-201ENST00000438938 274 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 PA2G4P1-201ENST00000442248 1197 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 MORF4-201ENST00000447135 971 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 WASF1P1-201ENST00000447560 1131 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 OR52Y1P-201ENST00000452418 828 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 SUMO2P2-201ENST00000456482 255 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 RN7SL369P-201ENST00000477138 299 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AC126182.1-201ENST00000478134 357 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 FCF1P3-201ENST00000496394 590 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 PRDX4P1-201ENST00000507189 574 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 CR383658.1-201ENST00000514609 734 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AL121766.1-201ENST00000547436 487 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 MTND4LP24-201ENST00000572277 291 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AC019131.2-201ENST00000609071 870 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 CDY11P-201ENST00000447168 1651 ntBASIC7.09□□□□□ -1.27
CCDC39Q9UFE4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.28
CCDC39Q9UFE4 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
CCDC39Q9UFE4 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 RNU4-76P-201ENST00000364509 141 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 MTCO2P11-201ENST00000431069 680 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AL392003.1-201ENST00000434394 243 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AL590399.4-201ENST00000436561 601 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 COX4I1P2-201ENST00000447446 547 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AL358876.1-201ENST00000453364 1075 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 RANP2-201ENST00000456833 229 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 RN7SL39P-201ENST00000462264 297 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 GM2AP2-201ENST00000491764 562 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 RNU6-1028P-201ENST00000517164 93 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 CYCSP25-201ENST00000525280 316 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 OR4A17P-201ENST00000526032 904 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AP001000.1-201ENST00000526843 742 ntBASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC7.08□□□□□ -1.28
CCDC39Q9UFE4 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms