Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 MIR298-201ENST00000401212 88 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 TEX41-203ENST00000420472 765 ntTSL 3 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 YWHAZP2-201ENST00000440317 728 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC016772.1-201ENST00000444170 1261 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC136777.2-201ENST00000522979 358 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC022726.1-201ENST00000587475 207 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC093671.1-201ENST00000624981 2929 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 RNU1-13P-201ENST00000384499 162 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 MIR659-201ENST00000384963 97 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC108463.1-201ENST00000450258 347 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 Z95152.1-201ENST00000453556 656 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 BUD31P1-201ENST00000521828 359 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC090220.1-201ENST00000593078 1699 ntBASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
SHANK3Q9BYB0 AC008758.3-201ENST00000507003 1829 ntBASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 CASKP1-201ENST00000412870 582 ntBASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AC138761.5-201ENST00000433967 325 ntBASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AL359265.1-201ENST00000440296 795 ntBASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 PRPF38AP1-201ENST00000451976 933 ntBASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 PRPF19P1-201ENST00000584766 898 ntBASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 ZYXP1-201ENST00000617638 118 ntBASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AL627171.1-201ENST00000618845 1308 ntBASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SHANK3Q9BYB0 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 SNORA48.4-201ENST00000391089 134 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 FHP1-201ENST00000442741 703 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 VN1R34P-201ENST00000447387 883 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 RN7SL542P-201ENST00000467147 294 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 RPL36AP41-201ENST00000493820 306 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 ENPP7P11-201ENST00000505915 627 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 NOL8P1-201ENST00000508336 3529 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 AC091868.1-201ENST00000508746 304 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 PRNCR1-201ENST00000635449 12727 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 Y_RNA.333-201ENST00000365274 102 ntBASIC6.28□□□□□ -1.4
SHANK3Q9BYB0 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms