Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RN7SL558P-201ENST00000497468 299 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.69□□□□□ -1.66
FOXA1P55317 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 Y_RNA.719-201ENST00000517156 106 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.69□□□□□ -1.66
FOXA1P55317 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.69□□□□□ -1.66
FOXA1P55317 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.69□□□□□ -1.66
FOXA1P55317 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
FOXA1P55317 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 OR7A8P-201ENST00000595427 913 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AC011445.2-201ENST00000599274 173 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 TAS2R6P-201ENST00000605022 826 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AC243960.7-201ENST00000623532 707 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
FOXA1P55317 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
FOXA1P55317 SOCS5P3-201ENST00000425115 1576 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AC093591.2-201ENST00000565254 3843 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
FOXA1P55317 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
FOXA1P55317 AL078595.2-201ENST00000605309 1780 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
FOXA1P55317 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.68□□□□□ -1.66
FOXA1P55317 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.68□□□□□ -1.66
FOXA1P55317 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
FOXA1P55317 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.68□□□□□ -1.66
FOXA1P55317 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.68□□□□□ -1.66
FOXA1P55317 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.68□□□□□ -1.66
FOXA1P55317 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.68□□□□□ -1.66
FOXA1P55317 AC005033.1-201ENST00000428904 813 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.68□□□□□ -1.66
FOXA1P55317 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.68□□□□□ -1.66
FOXA1P55317 CYCSP34-201ENST00000458172 304 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 RPL23AP56-201ENST00000460778 453 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.68□□□□□ -1.66
FOXA1P55317 RN7SL319P-201ENST00000480656 221 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AC116562.1-201ENST00000485355 781 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.68□□□□□ -1.66
FOXA1P55317 AC073358.1-201ENST00000505671 684 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 HIGD1AP14-201ENST00000507617 282 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.68□□□□□ -1.66
FOXA1P55317 GTF2IP11-201ENST00000526931 420 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 FKBP1BP1-201ENST00000553366 325 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.68□□□□□ -1.66
FOXA1P55317 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.68□□□□□ -1.66
FOXA1P55317 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 SNORA74C-1-201ENST00000580726 201 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AC011453.2-201ENST00000603737 729 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AC010424.2-201ENST00000607594 443 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AC093799.2-201ENST00000610062 578 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.68□□□□□ -1.66
FOXA1P55317 AC006453.5-201ENST00000636451 619 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 LINC01739-205ENST00000641890 573 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.68□□□□□ -1.66
FOXA1P55317 AC012078.1-201ENST00000405035 1646 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AC097461.1-201ENST00000568928 2821 ntBASIC4.68□□□□□ -1.66
FOXA1P55317 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
FOXA1P55317 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 AC107068.1-201ENST00000563286 4218 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
FOXA1P55317 RN7SKP74-201ENST00000362849 309 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 RNU1-106P-201ENST00000384382 164 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.67□□□□□ -1.66
FOXA1P55317 GJA6P-201ENST00000415117 1042 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 AC079355.1-201ENST00000421770 223 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.67□□□□□ -1.66
FOXA1P55317 RPL7L1P4-201ENST00000513004 707 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 AC004980.4-201ENST00000513375 203 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
FOXA1P55317 RN7SKP46-201ENST00000515942 234 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 FTH1P11-201ENST00000517577 551 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.67□□□□□ -1.66
FOXA1P55317 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms