Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6.31□□□□□ -1.4
COL18A1P39060 AC108751.5-201ENST00000492880 1336 ntBASIC6.3□□□□□ -1.4
COL18A1P39060 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.3□□□□□ -1.4
COL18A1P39060 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.3□□□□□ -1.4
COL18A1P39060 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC6.3□□□□□ -1.4
COL18A1P39060 ARL1-211ENST00000551828 776 ntTSL 5 BASIC6.3□□□□□ -1.4
COL18A1P39060 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL18A1P39060 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.3□□□□□ -1.4
COL18A1P39060 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC6.3□□□□□ -1.4
COL18A1P39060 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL18A1P39060 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL18A1P39060 ZNF812P-201ENST00000457674 1694 ntBASIC6.3□□□□□ -1.4
COL18A1P39060 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL18A1P39060 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL18A1P39060 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL18A1P39060 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
COL18A1P39060 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC6.29□□□□□ -1.4
COL18A1P39060 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 RPL7AP25-201ENST00000423357 805 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 AC021876.1-201ENST00000425959 359 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 RPS3AP54-201ENST00000435535 734 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 RN7SL558P-201ENST00000497468 299 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 AP000619.2-201ENST00000546014 969 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 CCDC58P3-201ENST00000590792 430 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.29□□□□□ -1.4
COL18A1P39060 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC6.29□□□□□ -1.4
COL18A1P39060 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL18A1P39060 AC104118.1-201ENST00000607625 1589 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC6.29□□□□□ -1.4
COL18A1P39060 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.29□□□□□ -1.4
COL18A1P39060 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
COL18A1P39060 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.29□□□□□ -1.4
COL18A1P39060 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC6.29□□□□□ -1.4
COL18A1P39060 AL356387.2-201ENST00000422272 243 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC6.29□□□□□ -1.4
COL18A1P39060 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.29□□□□□ -1.4
COL18A1P39060 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 HMGB1P23-201ENST00000518743 568 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.29□□□□□ -1.4
COL18A1P39060 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.29□□□□□ -1.4
COL18A1P39060 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.29□□□□□ -1.4
COL18A1P39060 AL591034.3-201ENST00000605511 685 ntBASIC6.29□□□□□ -1.4
COL18A1P39060 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.29□□□□□ -1.4
COL18A1P39060 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL18A1P39060 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL18A1P39060 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL18A1P39060 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.28□□□□□ -1.4
COL18A1P39060 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.28□□□□□ -1.4
COL18A1P39060 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC6.28□□□□□ -1.4
COL18A1P39060 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.28□□□□□ -1.4
COL18A1P39060 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
COL18A1P39060 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC6.28□□□□□ -1.4
COL18A1P39060 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC6.28□□□□□ -1.4
COL18A1P39060 NPM1P18-201ENST00000434232 732 ntBASIC6.28□□□□□ -1.4
COL18A1P39060 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
COL18A1P39060 RPL21P126-201ENST00000470049 478 ntBASIC6.28□□□□□ -1.4
COL18A1P39060 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.28□□□□□ -1.4
COL18A1P39060 AC015795.1-201ENST00000513669 327 ntBASIC6.28□□□□□ -1.4
COL18A1P39060 NPM1P6-201ENST00000521088 871 ntBASIC6.28□□□□□ -1.4
COL18A1P39060 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
COL18A1P39060 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC6.28□□□□□ -1.4
COL18A1P39060 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC6.28□□□□□ -1.4
COL18A1P39060 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC6.28□□□□□ -1.4
COL18A1P39060 AC090948.1-201ENST00000607464 549 ntBASIC6.28□□□□□ -1.4
COL18A1P39060 AL049536.1-201ENST00000625043 744 ntBASIC6.28□□□□□ -1.4
COL18A1P39060 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL18A1P39060 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL18A1P39060 AC004817.4-201ENST00000602396 3625 ntBASIC6.28□□□□□ -1.4
COL18A1P39060 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.28□□□□□ -1.4
COL18A1P39060 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC6.27□□□□□ -1.4
COL18A1P39060 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.4
COL18A1P39060 AC011447.7-201ENST00000624228 1590 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 AC097063.1-201ENST00000426714 1797 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL18A1P39060 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.27□□□□□ -1.41
COL18A1P39060 AC135352.1-201ENST00000506173 1418 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.27□□□□□ -1.41
COL18A1P39060 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL18A1P39060 SNORA37-201ENST00000384504 129 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 OR4C10P-201ENST00000434991 931 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 FTH1P16-201ENST00000435241 552 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms