Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR665-201ENST00000635949 72 ntBASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 AC233280.20-201ENST00000637412 416 ntBASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 AC183089.2-201ENST00000637931 916 ntBASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 AC010928.1-201ENST00000592477 1447 ntBASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 PIBF1-208ENST00000617689 2882 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 NOS2P3-202ENST00000458685 3328 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 LINC02159-202ENST00000518580 2323 ntTSL 2 BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 ZNF846-202ENST00000586293 1621 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC7.74□□□□□ -1.17
LIMD1Q9UGP4 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC007012.2-201ENST00000623206 1676 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL121835.2-201ENST00000624253 3502 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 CFAP61-205ENST00000377306 2017 ntTSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 UGT2B25P-201ENST00000511504 1586 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 RNU1-56P-201ENST00000391303 164 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 FDPSP5-201ENST00000399474 1057 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 RN7SKP148-201ENST00000410179 275 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 GSTA10P-201ENST00000412182 576 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 OR9R1P-201ENST00000412200 877 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 NCOR1P3-201ENST00000420479 303 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC233981.1-201ENST00000423224 461 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL353729.1-201ENST00000425044 720 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL355607.1-201ENST00000427745 295 ntTSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL353754.1-201ENST00000440219 340 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 BTF3P5-201ENST00000457252 467 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 NACAP6-201ENST00000509572 622 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC105029.1-201ENST00000520250 669 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AP003084.1-201ENST00000524828 742 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AP003080.1-202ENST00000526526 915 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 HPRT1P3-201ENST00000539521 576 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL355922.4-201ENST00000555642 449 ntTSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 SUB1P2-201ENST00000556401 297 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL589863.1-201ENST00000595383 631 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC005518.2-201ENST00000603254 282 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL096855.2-201ENST00000605785 369 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 MIR6885-201ENST00000612241 66 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AL732618.1-201ENST00000623251 301 ntBASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 HMGXB4-201ENST00000216106 4047 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 PSMC2-203ENST00000435765 3054 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 AP2B1-217ENST00000618940 3415 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
LIMD1Q9UGP4 HBP1-208ENST00000468410 2704 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 C6orf89-202ENST00000359359 2565 ntTSL 5 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 ZNF878-201ENST00000547628 1734 ntAPPRIS P1 TSL 3 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 SELP-201ENST00000263686 3142 ntAPPRIS P2 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 MRPS31P5-201ENST00000416599 3494 ntTSL 2 BASIC7.72□□□□□ -1.17
LIMD1Q9UGP4 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms