Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 UBE2Q2P1-202ENST00000354771 883 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 HMGB1P13-201ENST00000406019 642 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AL355433.1-201ENST00000422804 300 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 SETP9-201ENST00000423837 832 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 RPS4XP16-201ENST00000427198 791 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC097499.1-201ENST00000444277 208 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AL163193.1-201ENST00000444895 788 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 RPL7P45-201ENST00000455851 743 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC004263.1-201ENST00000479327 332 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC079203.1-201ENST00000487972 404 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 RPL17P2-201ENST00000491913 451 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC074255.1-201ENST00000511259 501 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC104417.1-201ENST00000523974 751 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC051619.2-201ENST00000559063 397 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC096996.1-201ENST00000563813 325 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 RBM22P12-201ENST00000567098 1255 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 RBM22P1-201ENST00000578589 1214 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 MIR4443-201ENST00000585052 53 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 OR7E18P-201ENST00000592589 702 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC013444.2-201ENST00000603317 787 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 SDR42E1P1-201ENST00000611327 477 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AL355974.3-201ENST00000617383 467 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AL121890.3-201ENST00000618494 516 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC112694.2-201ENST00000623697 768 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AP002967.1-201ENST00000624203 539 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 AC090897.3-201ENST00000636973 1157 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 NF1-214ENST00000490416 1329 ntTSL 3 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.96□□□□□ -1.45
TDP1Q9NUW8 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
TDP1Q9NUW8 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.96□□□□□ -1.45
TDP1Q9NUW8 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
TDP1Q9NUW8 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.45
TDP1Q9NUW8 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
TDP1Q9NUW8 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 RNA5SP131-201ENST00000365452 119 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 MIR142-201ENST00000384835 87 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 RNU6-1242P-201ENST00000391052 103 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 ATP5F1P2-201ENST00000398143 760 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC119751.3-201ENST00000399720 670 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 RN7SKP278-201ENST00000410504 342 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC016769.2-201ENST00000414815 475 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 MTCO3P4-201ENST00000419236 787 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 FO393419.3-201ENST00000428741 282 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AL590399.4-201ENST00000436561 601 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AL390119.1-201ENST00000440329 312 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 OR51B8P-201ENST00000449892 769 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AL122001.1-201ENST00000457027 370 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 NDUFA5P9-201ENST00000472609 340 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AL035690.1-201ENST00000490892 383 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC008837.1-201ENST00000511513 412 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC027026.1-201ENST00000532323 742 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 MTND4P33-201ENST00000556706 766 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.96□□□□□ -1.46
TDP1Q9NUW8 OR2BH1P-201ENST00000608850 864 ntBASIC5.96□□□□□ -1.46
TDP1Q9NUW8 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms