Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 RPL34P27-201ENST00000428810 349 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC073091.2-201ENST00000603205 907 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC007497.1-201ENST00000610421 561 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AL162574.1-201ENST00000615702 950 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 AC073342.2-201ENST00000595842 1800 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 RAD23BP1-201ENST00000421404 1227 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 RPL12P28-201ENST00000430852 489 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 AL450023.3-201ENST00000440592 271 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 SNORA67.7-201ENST00000516664 135 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 ARL6IP1P1-201ENST00000545836 610 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 MIR3158-1-201ENST00000583596 81 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 AC017100.2-201ENST00000584628 355 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 PRELID3BP3-201ENST00000584963 545 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 AC005191.1-201ENST00000603950 358 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 AL121890.3-201ENST00000618494 516 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 OFD1P9Y-201ENST00000417699 1491 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC6.32□□□□□ -1.4
SHANK3Q9BYB0 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 RNU4-64P-201ENST00000410795 131 ntBASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 GAPDHP49-201ENST00000421421 961 ntBASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 TLK1P1-201ENST00000456760 2440 ntBASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHANK3Q9BYB0 AL079305.1-201ENST00000623159 3008 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms