Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS39Q96JC1 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
VPS39Q96JC1 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 SMG1P6-201ENST00000532337 2930 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 MIR105-1-201ENST00000385222 81 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 MT-TP-201ENST00000387461 68 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 OR8V1P-201ENST00000395193 873 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 RNA5SP178-201ENST00000410380 128 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 RNU2-50P-201ENST00000410494 143 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 NPM1P40-201ENST00000412758 733 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC104843.2-201ENST00000427666 297 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC073909.1-201ENST00000447112 999 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 PTMAP3-201ENST00000447474 330 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 YWHAEP1-201ENST00000453697 763 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC008410.1-201ENST00000483777 339 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 COX6B1P2-201ENST00000489624 230 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 MTCO3P42-201ENST00000509488 518 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 MTATP6P1-201ENST00000514057 681 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC006427.1-201ENST00000514359 712 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 MTCO3P39-201ENST00000514812 518 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC068993.1-201ENST00000546724 589 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 MIR4310-201ENST00000582950 57 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 RN7SL787P-201ENST00000613000 284 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AL133370.2-201ENST00000619934 439 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 AC114947.2-201ENST00000565748 2125 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 BX005019.1-201ENST00000561881 1810 ntBASIC5.23□□□□□ -1.57
VPS39Q96JC1 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
VPS39Q96JC1 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS39Q96JC1 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 RPL10P10-201ENST00000403509 664 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 RN7SKP16-201ENST00000410180 299 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 OR6K4P-201ENST00000423179 955 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 OR5M12P-201ENST00000423388 929 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS39Q96JC1 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 AL392003.1-201ENST00000434394 243 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC012075.1-201ENST00000436549 580 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS39Q96JC1 CALM1P2-201ENST00000452941 448 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 RPS27AP2-201ENST00000457576 465 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC100832.1-201ENST00000471945 383 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 AC096741.1-201ENST00000472250 846 ntBASIC5.22□□□□□ -1.57
VPS39Q96JC1 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms