Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AP001542.1-201ENST00000591314 200 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC087283.1-201ENST00000604029 1074 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC090527.3-201ENST00000619041 548 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC109446.4-201ENST00000623235 2755 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC003973.3-201ENST00000624863 2822 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC009506.2-201ENST00000420635 840 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AL591363.1-201ENST00000450091 483 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC022431.1-201ENST00000450941 438 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC104634.1-201ENST00000452720 462 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC009127.1-201ENST00000467090 155 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 RN7SL738P-201ENST00000470264 297 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 RN7SL423P-201ENST00000486202 304 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 RN7SL205P-201ENST00000490174 284 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 GLUD1P3-202ENST00000508551 200 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 EIF3KP3-201ENST00000514461 639 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 EDDM3DP-201ENST00000554692 434 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 EIF1AXP2-201ENST00000555940 413 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 MIR4697-201ENST00000582977 78 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 RN7SL52P-201ENST00000584271 284 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 SNX6P1-201ENST00000601728 1224 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC005252.1-201ENST00000604518 1063 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC007620.3-201ENST00000608131 497 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 RNA5SP439-201ENST00000617595 124 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 RN7SL722P-201ENST00000617780 284 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 RN7SL565P-201ENST00000618246 284 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 TRIM51GP-201ENST00000534741 1350 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 AC093849.1-201ENST00000563631 2209 ntBASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.36□□□□□ -1.55
HDDC3Q8N4P3 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC138907.8-201ENST00000623981 2256 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC092681.1-201ENST00000297369 291 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 BUD31P2-201ENST00000449374 300 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 RPS3AP53-201ENST00000454716 778 ntBASIC5.35□□□□□ -1.55
HDDC3Q8N4P3 Z92846.1-201ENST00000456203 268 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms