Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.68□□□□□ -1.5
VRK3Q8IV63 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC5.68□□□□□ -1.5
VRK3Q8IV63 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VRK3Q8IV63 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.68□□□□□ -1.5
VRK3Q8IV63 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VRK3Q8IV63 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
VRK3Q8IV63 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
VRK3Q8IV63 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VRK3Q8IV63 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VRK3Q8IV63 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.68□□□□□ -1.5
VRK3Q8IV63 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VRK3Q8IV63 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
VRK3Q8IV63 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VRK3Q8IV63 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.68□□□□□ -1.5
VRK3Q8IV63 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VRK3Q8IV63 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 RNU6-481P-201ENST00000384194 107 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 FCF1P5-201ENST00000406490 482 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 LINC01881-201ENST00000416103 412 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 RPL12P43-201ENST00000420608 499 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL365203.2-201ENST00000423444 196 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 RPL12P16-201ENST00000431098 498 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 EXTL2P1-201ENST00000446218 416 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 TRY2P-201ENST00000448860 689 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 MYO5BP2-201ENST00000449815 1277 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AP006222.1-205ENST00000450734 457 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 RPS27AP8-201ENST00000452665 445 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 RPSAP37-201ENST00000470913 821 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 TPT1P3-201ENST00000492841 512 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC026414.1-201ENST00000504046 698 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 RPF2P2-201ENST00000504693 896 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 XKRY-201ENST00000510392 1100 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC093770.1-201ENST00000511559 571 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 RNA5SP271-201ENST00000516700 88 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC004923.2-201ENST00000529649 369 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL121594.2-201ENST00000541658 472 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC007349.4-201ENST00000608114 532 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL096712.1-201ENST00000614561 159 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 AK6-205ENST00000618980 483 ntTSL 2 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AL359715.5-201ENST00000623431 443 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 GMFB-210ENST00000628554 639 ntTSL 4 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 OR8G3P-202ENST00000641572 1255 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC137056.2-201ENST00000624055 1958 ntBASIC5.67□□□□□ -1.5
VRK3Q8IV63 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
VRK3Q8IV63 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
VRK3Q8IV63 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
VRK3Q8IV63 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.66□□□□□ -1.5
VRK3Q8IV63 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.66□□□□□ -1.5
VRK3Q8IV63 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.66□□□□□ -1.5
VRK3Q8IV63 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
VRK3Q8IV63 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 WDR95P-201ENST00000425638 1542 ntBASIC5.66□□□□□ -1.5
VRK3Q8IV63 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VRK3Q8IV63 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms