Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AL512422.1-201ENST00000407033 553 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 RN7SKP206-201ENST00000410823 293 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 EIF4A1P3-201ENST00000411521 244 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC092570.3-201ENST00000420113 693 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC023512.1-201ENST00000444513 499 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 MTND2P25-201ENST00000449028 610 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 VDAC2P4-201ENST00000452925 711 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 HMGB1P4-201ENST00000455362 567 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 UBA52P3-201ENST00000491303 382 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 RPS27AP16-201ENST00000492222 470 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC010627.1-201ENST00000503819 1294 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC021087.2-201ENST00000504656 1203 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 RNU6-467P-201ENST00000517027 110 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 OR4A43P-201ENST00000532938 908 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC027544.3-201ENST00000535082 757 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 SS18L2P2-201ENST00000583960 235 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AL589674.2-201ENST00000604304 337 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC007786.3-201ENST00000615154 596 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC079298.2-201ENST00000623885 459 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 TCP11X1-202ENST00000622971 1372 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 AC093591.2-201ENST00000565254 3843 ntBASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP54Q7Z3B4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 RN7SKP124-201ENST00000364730 341 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AL391422.1-201ENST00000402155 436 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 RNU2-72P-201ENST00000411175 163 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AL121776.1-201ENST00000429337 372 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AL136231.1-201ENST00000429407 730 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AL391987.1-201ENST00000441025 200 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AC108751.3-201ENST00000461814 1020 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 RN7SL174P-201ENST00000475578 289 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 SSR3-208ENST00000496050 579 ntTSL 4 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AC015864.1-201ENST00000496512 544 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 SEPT10P1-201ENST00000517342 1162 ntBASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.11□□□□□ -1.59
NUP54Q7Z3B4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 130.4 ms