Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
HNF4AP41235 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
HNF4AP41235 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HNF4AP41235 AL445437.1-201ENST00000623157 3087 ntBASIC5.27□□□□□ -1.57
HNF4AP41235 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HNF4AP41235 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HNF4AP41235 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HNF4AP41235 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 U3.7-201ENST00000363668 216 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 AL391422.1-201ENST00000402155 436 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.26□□□□□ -1.57
HNF4AP41235 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 AC048351.1-201ENST00000420064 602 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.26□□□□□ -1.57
HNF4AP41235 AL445528.1-201ENST00000426330 420 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.26□□□□□ -1.57
HNF4AP41235 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 AC012075.1-201ENST00000436549 580 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC092013.1-201ENST00000438795 332 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC016772.1-201ENST00000444170 1261 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 PTMAP3-201ENST00000447474 330 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AL672138.1-201ENST00000450604 1015 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 RN7SL273P-201ENST00000481561 299 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.26□□□□□ -1.57
HNF4AP41235 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.26□□□□□ -1.57
HNF4AP41235 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.26□□□□□ -1.57
HNF4AP41235 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 AC109464.1-201ENST00000511091 819 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC021193.1-201ENST00000511607 420 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.26□□□□□ -1.57
HNF4AP41235 MTND6P2-201ENST00000512226 524 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 SCARNA20.4-201ENST00000516969 131 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 TMEM97P2-201ENST00000517841 403 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.26□□□□□ -1.57
HNF4AP41235 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 AC020978.7-201ENST00000575953 1187 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 MIR1273E-201ENST00000581165 102 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.26□□□□□ -1.57
HNF4AP41235 AC104695.2-201ENST00000605056 775 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 AL133406.3-201ENST00000606817 541 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC100814.1-201ENST00000606963 623 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 AL139407.1-201ENST00000613826 1175 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AL118522.2-201ENST00000616045 615 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 AC006213.4-201ENST00000616184 634 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.26□□□□□ -1.57
HNF4AP41235 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
HNF4AP41235 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
HNF4AP41235 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.26□□□□□ -1.57
HNF4AP41235 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
HNF4AP41235 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.26□□□□□ -1.57
HNF4AP41235 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
HNF4AP41235 PHKBP1-201ENST00000450951 1951 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HNF4AP41235 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HNF4AP41235 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
HNF4AP41235 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
HNF4AP41235 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HNF4AP41235 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.25□□□□□ -1.57
HNF4AP41235 MIR323A-201ENST00000362199 86 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 RNU6-666P-201ENST00000363499 107 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 SNORA16A-201ENST00000384342 137 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 RNU6-31P-201ENST00000384388 108 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HNF4AP41235 SNORA48.4-201ENST00000391089 134 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 AL512430.2-201ENST00000406786 339 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.25□□□□□ -1.57
HNF4AP41235 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.25□□□□□ -1.57
HNF4AP41235 NDUFA5P10-201ENST00000432147 357 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.25□□□□□ -1.57
HNF4AP41235 AL391987.1-201ENST00000441025 200 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.25□□□□□ -1.57
HNF4AP41235 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.25□□□□□ -1.57
HNF4AP41235 EIF4A1P11-201ENST00000451239 222 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 RANP1-206ENST00000455094 651 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 HMGB1P4-201ENST00000455362 567 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 RN7SL51P-201ENST00000468230 285 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HNF4AP41235 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms