Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC004129.2-201ENST00000457229 287 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 AC098799.3-201ENST00000506095 438 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC6.9□□□□□ -1.3
HMGB1P09429 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC6.9□□□□□ -1.3
HMGB1P09429 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HMGB1P09429 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HMGB1P09429 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.9□□□□□ -1.3
HMGB1P09429 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC6.9□□□□□ -1.3
HMGB1P09429 AL442163.2-201ENST00000553912 710 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 HNRNPCP1-201ENST00000556181 766 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.9□□□□□ -1.3
HMGB1P09429 AL356801.1-201ENST00000559320 294 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC6.9□□□□□ -1.3
HMGB1P09429 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC6.9□□□□□ -1.3
HMGB1P09429 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC6.9□□□□□ -1.3
HMGB1P09429 AC009852.2-201ENST00000567898 485 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC6.9□□□□□ -1.3
HMGB1P09429 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.9□□□□□ -1.3
HMGB1P09429 AC243756.2-201ENST00000618406 463 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 OR11H2-202ENST00000641517 1085 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.9□□□□□ -1.3
HMGB1P09429 AC007529.1-201ENST00000418574 2178 ntBASIC6.9□□□□□ -1.3
HMGB1P09429 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC6.9□□□□□ -1.3
HMGB1P09429 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
HMGB1P09429 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.9□□□□□ -1.31
HMGB1P09429 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
HMGB1P09429 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HMGB1P09429 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.9□□□□□ -1.31
HMGB1P09429 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
HMGB1P09429 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
HMGB1P09429 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.31
HMGB1P09429 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
HMGB1P09429 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
HMGB1P09429 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.89□□□□□ -1.31
HMGB1P09429 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HMGB1P09429 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HMGB1P09429 OR6K3-202ENST00000368146 996 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AP002784.2-201ENST00000397300 549 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
HMGB1P09429 PRELID3BP11-201ENST00000414230 479 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 RPL37P1-201ENST00000432310 284 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AC069154.1-201ENST00000432914 542 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC6.89□□□□□ -1.31
HMGB1P09429 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC6.89□□□□□ -1.31
HMGB1P09429 AC073522.1-201ENST00000483312 377 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AC090058.1-201ENST00000498788 435 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AC105384.2-201ENST00000508433 640 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AC109481.1-201ENST00000509173 282 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 AC008494.2-201ENST00000514544 370 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AC011853.1-201ENST00000518911 454 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 PCNAP4-201ENST00000532690 730 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 AC079905.1-201ENST00000549280 475 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 GLRXP2-201ENST00000555594 321 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 EIF1P6-201ENST00000600054 334 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 AC007204.2-201ENST00000615022 616 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 PDZK1P1-202ENST00000425209 1350 ntBASIC6.89□□□□□ -1.31
HMGB1P09429 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HMGB1P09429 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.89□□□□□ -1.31
HMGB1P09429 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
HMGB1P09429 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC6.89□□□□□ -1.31
HMGB1P09429 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.89□□□□□ -1.31
HMGB1P09429 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.89□□□□□ -1.31
HMGB1P09429 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HMGB1P09429 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.88□□□□□ -1.31
HMGB1P09429 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
HMGB1P09429 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HMGB1P09429 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.88□□□□□ -1.31
HMGB1P09429 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
HMGB1P09429 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC6.88□□□□□ -1.31
HMGB1P09429 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HMGB1P09429 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HMGB1P09429 RN7SKP187-201ENST00000365536 330 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
HMGB1P09429 AGR3-202ENST00000402239 563 ntTSL 2 BASIC6.88□□□□□ -1.31
HMGB1P09429 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC6.88□□□□□ -1.31
HMGB1P09429 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC6.88□□□□□ -1.31
HMGB1P09429 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.88□□□□□ -1.31
HMGB1P09429 AL096803.2-201ENST00000450032 677 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HMGB1P09429 MRPL35P4-201ENST00000453682 566 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 RPL12P39-201ENST00000455456 496 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 AC008379.1-201ENST00000463655 464 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 RN7SL57P-201ENST00000493687 290 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.88□□□□□ -1.31
HMGB1P09429 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC6.88□□□□□ -1.31
HMGB1P09429 AC110792.2-201ENST00000510278 224 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 MTND1P36-201ENST00000522384 936 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.88□□□□□ -1.31
HMGB1P09429 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.88□□□□□ -1.31
HMGB1P09429 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.88□□□□□ -1.31
HMGB1P09429 AC006530.1-201ENST00000555980 571 ntBASIC6.88□□□□□ -1.31
HMGB1P09429 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 1286.7 ms