Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 AC020890.1-201ENST00000491837 504 ntBASIC2.95□□□□□ -1.94
APOBP04114 TPT1P3-201ENST00000492841 512 ntBASIC2.95□□□□□ -1.94
APOBP04114 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
APOBP04114 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 RN7SKP248-201ENST00000516278 305 ntBASIC2.95□□□□□ -1.94
APOBP04114 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 CYCSP10-201ENST00000417973 294 ntBASIC2.95□□□□□ -1.94
APOBP04114 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC2.95□□□□□ -1.94
APOBP04114 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 RGS5-218ENST00000526176 574 ntTSL 4 BASIC2.95□□□□□ -1.94
APOBP04114 OR4A2P-201ENST00000527276 913 ntBASIC2.95□□□□□ -1.94
APOBP04114 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC2.95□□□□□ -1.94
APOBP04114 AC020634.1-201ENST00000608701 549 ntBASIC2.95□□□□□ -1.94
APOBP04114 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 AC018628.1-201ENST00000624147 3819 ntBASIC2.95□□□□□ -1.94
APOBP04114 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC2.95□□□□□ -1.94
APOBP04114 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
APOBP04114 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 MIR449B-201ENST00000384995 97 ntBASIC2.95□□□□□ -1.94
APOBP04114 RN7SKP267-201ENST00000410381 285 ntBASIC2.95□□□□□ -1.94
APOBP04114 RN7SKP33-201ENST00000410942 340 ntBASIC2.95□□□□□ -1.94
APOBP04114 SLC4A1APP1-201ENST00000419995 602 ntBASIC2.95□□□□□ -1.94
APOBP04114 AC046176.1-201ENST00000435260 1170 ntBASIC2.95□□□□□ -1.94
APOBP04114 AL390879.1-201ENST00000439143 386 ntBASIC2.95□□□□□ -1.94
APOBP04114 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 MTND4LP2-201ENST00000502312 285 ntBASIC2.95□□□□□ -1.94
APOBP04114 RNU6-709P-201ENST00000517257 104 ntBASIC2.95□□□□□ -1.94
APOBP04114 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
APOBP04114 TLK1P1-201ENST00000456760 2440 ntBASIC2.95□□□□□ -1.94
APOBP04114 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 AC233968.1-201ENST00000611212 1300 ntBASIC2.95□□□□□ -1.94
APOBP04114 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
APOBP04114 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC2.95□□□□□ -1.94
APOBP04114 PSMB7P1-201ENST00000556349 514 ntBASIC2.95□□□□□ -1.94
APOBP04114 AGGF1P6-201ENST00000569213 976 ntBASIC2.95□□□□□ -1.94
APOBP04114 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC2.95□□□□□ -1.94
APOBP04114 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 BNIP3P19-201ENST00000605397 577 ntBASIC2.95□□□□□ -1.94
APOBP04114 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC2.95□□□□□ -1.94
APOBP04114 CDRT1-208ENST00000630868 794 ntBASIC2.95□□□□□ -1.94
APOBP04114 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
APOBP04114 ST7-212ENST00000422922 1887 ntTSL 5 BASIC2.94□□□□□ -1.94
APOBP04114 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 PRDM11-206ENST00000622142 10730 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
APOBP04114 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 H3F3BP1-201ENST00000440551 403 ntBASIC2.94□□□□□ -1.94
APOBP04114 MTCO1P49-201ENST00000523429 802 ntBASIC2.94□□□□□ -1.94
APOBP04114 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC2.94□□□□□ -1.94
APOBP04114 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC2.94□□□□□ -1.94
APOBP04114 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 OR14L1P-202ENST00000641545 3009 ntBASIC2.94□□□□□ -1.94
APOBP04114 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
APOBP04114 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
APOBP04114 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC2.94□□□□□ -1.94
APOBP04114 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 SLC2A3P1-201ENST00000519666 1451 ntBASIC2.94□□□□□ -1.94
APOBP04114 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC2.94□□□□□ -1.94
APOBP04114 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
APOBP04114 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC2.94□□□□□ -1.94
APOBP04114 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
APOBP04114 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms