Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 RNA5SP123-201ENST00000363244 119 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 SNORA51.8-201ENST00000384234 132 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC136624.1-201ENST00000400791 413 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 PPIAP9-201ENST00000403866 498 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 MIR1182-201ENST00000408363 97 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC245028.1-201ENST00000423259 256 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 RPS4XP16-201ENST00000427198 791 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 PRPF38AP2-201ENST00000438179 851 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 RPS29P10-201ENST00000439197 166 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC092647.2-201ENST00000452998 253 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 RPS3AP53-201ENST00000454716 778 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 CEACAMP10-202ENST00000495431 496 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 IGBP1P4-201ENST00000503202 879 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 NIFKP7-201ENST00000503365 834 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC091953.3-201ENST00000623220 236 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC112694.2-201ENST00000623697 768 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 NXF4-202ENST00000416098 1465 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC100757.1-201ENST00000616872 1835 ntBASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.04□□□□□ -1.6
TMX2-CTNND1H3BSU7 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC010132.2-201ENST00000295493 1043 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 RPL21P67-201ENST00000402896 478 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 RN7SKP16-201ENST00000410180 299 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 COX6B1P1-201ENST00000415962 213 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC104634.1-201ENST00000452720 462 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 RPL7P16-201ENST00000479738 738 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC021106.1-201ENST00000509020 1058 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC091912.1-201ENST00000511351 248 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC098976.1-201ENST00000513014 541 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 SNORA26.10-201ENST00000516427 141 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC100784.1-201ENST00000522790 310 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC073575.2-201ENST00000614212 627 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AP003400.3-201ENST00000624904 346 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 PCAT14-202ENST00000627127 3935 ntBASIC5.03□□□□□ -1.6
TMX2-CTNND1H3BSU7 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.03□□□□□ -1.61
TMX2-CTNND1H3BSU7 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.03□□□□□ -1.61
TMX2-CTNND1H3BSU7 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
TMX2-CTNND1H3BSU7 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
TMX2-CTNND1H3BSU7 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
TMX2-CTNND1H3BSU7 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.02□□□□□ -1.61
TMX2-CTNND1H3BSU7 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
TMX2-CTNND1H3BSU7 AC008079.2-201ENST00000623543 20396 ntBASIC5.02□□□□□ -1.61
TMX2-CTNND1H3BSU7 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TMX2-CTNND1H3BSU7 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
TMX2-CTNND1H3BSU7 U3.3-201ENST00000362986 216 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 215 ms