Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 AP006587.1-201ENST00000534129 1502 ntBASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 DAP-202ENST00000432074 1048 ntTSL 2 BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC37.2■■■■□ 3.55
SHROOM4Q9ULL8 AL671277.2-201ENST00000458060 996 ntBASIC37.2■■■■□ 3.54
SHROOM4Q9ULL8 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC37.2■■■■□ 3.54
SHROOM4Q9ULL8 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC37.2■■■■□ 3.54
SHROOM4Q9ULL8 NDUFV2-AS1-203ENST00000608008 779 ntBASIC37.2■■■■□ 3.54
SHROOM4Q9ULL8 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 SLC25A1P2-201ENST00000430693 912 ntBASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 CD81-212ENST00000526072 1172 ntTSL 5 BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC37.19■■■■□ 3.54
SHROOM4Q9ULL8 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC37.18■■■■□ 3.54
SHROOM4Q9ULL8 AC073314.1-201ENST00000568729 2216 ntBASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC37.17■■■■□ 3.54
SHROOM4Q9ULL8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 CCR12P-201ENST00000446203 998 ntBASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 AP000692.2-201ENST00000608391 879 ntBASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 AC141257.4-201ENST00000634557 245 ntBASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 AC136944.6-201ENST00000634818 245 ntBASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC37.16■■■■□ 3.54
SHROOM4Q9ULL8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 AC116562.4-202ENST00000641738 218 ntBASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 PHGDH-210ENST00000641115 1638 ntBASIC37.15■■■■□ 3.54
SHROOM4Q9ULL8 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
SHROOM4Q9ULL8 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC37.14■■■■□ 3.54
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms