Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 AC105020.6-201ENST00000621523 1217 ntBASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCAL1Q9NZC9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 MCRIP2P1-201ENST00000394346 511 ntBASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 AL355472.2-201ENST00000422958 438 ntBASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SMARCAL1Q9NZC9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 AC006333.2-201ENST00000607957 2099 ntBASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 AC006015.1-201ENST00000429970 570 ntBASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 RARRES2P4-201ENST00000514074 484 ntBASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 AC018470.1-201ENST00000624790 3129 ntBASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 TEX21P-204ENST00000641479 1693 ntBASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.54■□□□□ 0.88
SMARCAL1Q9NZC9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 AC007322.4-201ENST00000509611 723 ntBASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SMARCAL1Q9NZC9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 LETM1P2-201ENST00000597330 2178 ntBASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms